Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1002514 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1002514 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12340
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (66.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12340

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (66.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F004760	Metagenome / Metatranscriptome	424	N
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F025460	Metagenome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10025141	F004760	AGAAG	MPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLALVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQFTPDSIKRATLRRKKYGE
Ga0209190_100251412	F000635	GGAG	MTLTEIAQYAGEKIGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCLTRTNIIVDFPPSTTALDDELRLPHVHHLVLALTHADALERERQYAKAQAITQSANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0209190_100251414	F002149	N/A	MTAIEYIEQSGVPEGMWNNLAEWFGWFEKQGMVGIVRDKDGIAGVALARCINDGQEPNHYVHSENGENVFVDLTISSKGAKSLRCLLLLLVERFGPRKRIIFNRSGKPKEYDYMKFMRKALR
Ga0209190_100251417	F025460	AGGAG	MAVLDVPALLDMFRQDELQKQAVAEAQRKQALEERAMSLKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLSGIGSTISNEQNLQNEEVEAQRAELTDRLQKLQKNKVKQEVEMAKGDKRTFAMEAGLGLIGAKPRADVLKDIEAEAGVYRNKLAELGFNKQSGQMETNVPEYQSPTMPIQATQQSAPEAPAKAPAQPEAPKNFNSLQEAKAAGVKPGELIYINGKPGRLQARQ
Ga0209190_10025142	F010603	AGGAG	MANEFVRSTRKAKGKAIRFDTQGQTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT
Ga0209190_10025144	F012569	N/A	MSRALDKFQGQYGFSVGSTGTATAGYWAIQMLSDTTFSAISGRYDGTLTGITIGSGNIIYGEFNSYTAGTGTVIGYIAG
Ga0209190_10025147	F010449	AGG	MSEEQVWDLEIRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTRLLAVAGLIGLICSMAWDVLKNRLSN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1002514

Overview

Ecosystem & Geography

Associated Families

Sequences