Scaffold Ga0209190_1002425

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1002425
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12543
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F024785	Metagenome	204	Y
F029433	Metagenome	188	Y
F032279	Metagenome	180	Y
F037730	Metagenome	167	Y
F038591	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100242515	F038591	GAG	MNTTTTVQVAGVKETINALKKIDPELQKQFKADATAIAKPAINAVQNKYTQVPLSGMSRDWQWHKRNPPQRIKGFDVGRAKRGVQMKFDTRRNAIGVILIIQKDQAAAIFETAGRANSSRLSQNLGDVQPGRTRIIGPAVYRARKGIEREMQQMINGVSSMIARQM
Ga0209190_100242518	F029433	GAG	MDYEVTSNRLNGHKRGDIIREADLGDLTTDLLFLVEAGHLSPLKVKKSAKTIDIDPQE
Ga0209190_10024254	F037730	GGCGG	MKEFNEAQSTNEYLIGELVIARKRNEVLTQHIATLVKHIETLAEDLKMSSQLLDACVAYM
Ga0209190_10024255	F014620	N/A	MFAPSIGLGGTFERPAINRDIVIIAREAKQTSVDAALKAKPKTGKKRARVHAYLLGRPATDEEIEIALNMSGNTVRPTRGTLVKDGHVIDSGMRRLTRAGNEAIVWRCV
Ga0209190_10024256	F013413	N/A	MRSYSATTVLYHVQNINPNRKEKAMTENEYNETFDMQMEKEHQLNLDRMRQFQLIGEQISKMPDASPKVLEIEVRYLMGIIGELETRIKDLESEARRLEMLLTRAN
Ga0209190_10024257	F032279	GAGG	MHFIIKLTIAFALSAIGVGVSQIPQPQPDMSTTTPTDKPYEALGGFGQAMADIYRYVPPVTTTTPPAPIYRHGDCSWLPALALQAGWQPEQIPQLTKYALRESGCCPNRAGGDTVDKDCNITGVAEWSHRSDSGLLQINGVHWKPDHPQYDGLICKQMRICTQKPLLDALTNLRAARLIYLRVGWSAWGN
Ga0209190_10024258	F024785	N/A	MDYWITRAIKHSNKSLWNNGSWIIRDIKNKPGTISNHAKGVAVDLSYRYNSSTNAGRTASLPYITKLLENADTLGVELCIDYALRRSWKCDRGTWIAGNFQTGDWYHIEINPVMAHSVELAKQAWDKVFGLIPAVIKKPV
Ga0209190_10024259	F003213	GGA	LDTKKINKSHRQIGDQTTKGGLLGIFIYVLSRNNVDPVLIGLLVPVVASVLAWISTKIGDPDLACMFIPDDKKAK