Scaffold Ga0209190_1002077

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1002077
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13715
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005703	Metagenome / Metatranscriptome	392	Y
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F030055	Metagenome	186	Y
F066703	Metagenome	126	Y
F071017	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100207713	F011282	N/A	MKKIKNIVVITGTYTNKDGQEKKRYQTIGSLFEDGENFKIKLDTIPLADGGWTGWANCYDLEEKTNKPEGKYDDTSIPF
Ga0209190_100207718	F005737	AGGA	MFDIEKYTKPTDWSQIALWVVSAAAIVVVLLDLFIWRP
Ga0209190_100207719	F030055	AGGAG	MKHIATLPALDARIMIDQGLEHLVVEHGDLTKPLDCYFCPVTGNLWHAYLGTTELYNVLSATVISALEREFAPLCV
Ga0209190_100207722	F066703	GGAGG	MAITNFTQQKDDSFDEIQRLMCSVYGCPNRWSVHSDGDKPKCSKHQWQRIEKKPAVQSWHEVGEEF
Ga0209190_100207724	F071017	GGAG	MNDLLQTPSLPDSKTAKNLASLSSEQRYEMLETLRQTEAKDWIRRYRKKIREHGKAAASAWWLQTLSDVVERRGQKAADDLRRRMNAIRS
Ga0209190_10020776	F005703	GGGGG	VGWVACCLFIALLLPLGAMLYLDILEAKHEIKAQVEKVEKLRREIEKEKRDADRPK