Scaffold Ga0209190_1002057

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1002057
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13780
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (96.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F019944	Metagenome	226	Y
F025266	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100205717	F025266	AGGAG	MRHPEPQIVTLYRATLNAEPPRVCHTCDHYTEQGLCAEYNDTPPPEFASEPGGCALWEWEVPF
Ga0209190_10020574	F019944	GGGGG	MNSEEDEFRRIEAEALRLWAAQTDDDDDTQVYAKPWVGLTWEDMPEEYAGDSNFLSGARWAEARLKEKNNG
Ga0209190_10020575	F011669	GGA	MNDDDDYELANLMHLIATVILILFAVTGIAGLAGFLWGTL
Ga0209190_10020576	F004450	GGA	MNWVAAALVALAMSTAYLLDGPSEHEARIDTVEEKIQKLCGENAGWKMLADGSVQCFTHRGFKTRKVTL