Scaffold Ga0209190_1002003

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1002003
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13958
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F024785	Metagenome	204	Y
F032279	Metagenome	180	Y
F038591	Metagenome	165	Y
F048984	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100200314	F038591	N/A	MTTTARIEVVGVKDTINQLNKLDKELAKEFKASATRVAQPAIDAAKNMYTQVPLSGMSRDWTQKKDGRKIKGFSVAKAKAGVQMKFDTRRNAIGVILIIQKDQAAAIFETAGRANANRLSNNLSPVTAGRTRFIGPAVYRSRRGIETEMKQVIAEASRTVQKGL
Ga0209190_100200319	F048984	AGG	MAAQTYSDLFNTSINTLATTLNAVSGLVCVTDPRSVQPPCILLDAMSFTAFNSNIVDMSIPVTVISLGPSNADAYRNALNIAAKVLTAKVAVTDGRPTTLTIGGVDYPALSLNIQMKAST
Ga0209190_10020035	F014620	N/A	MFAPSIGLGGTFERPAINRDIVIIAREAKQTSVDAAIKAKSKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNQAIVWRCV
Ga0209190_10020036	F013413	N/A	MRSYSATTVLYHVQNINLNRKEKAMTENEYNETFDLQMEREHQETLRRMREFRLIGEQISKMPDTPPKVLEIEVRYLMGIISELETRIKDLESEARRLEMLLTRAN
Ga0209190_10020037	F032279	GAGG	MHFIIKLTIAFALSAIGIGVSQIPQPQPDMSSTTPTDKPYEVLGGFAQAMADIYRYVPPVTTTTPPAPVYRHGDCSWLPALALQAGWQPEQIPQLTKYAARESGCCPNRAGGDTVDKDCNITGVAEWSHRSDSGLLQINGVHWKPDHPQYDGLICKQMRICTQKPLLDALTNLRAARLIYLRVGWSAWGN
Ga0209190_10020038	F024785	N/A	MKPYTVNAAPVVAKPLAGMDIWVSRAVYHSDKSLWNNGTWVVRDVRNKPGIVSNHAKGVACDISYRWISASSKGRQDGRKVSLAYINKLLENADTLGIELVIDYALNRSWKCDRATWKGGTFEPGDWWHVEVNPVICNSPELAKQAWDKVFGLIPSVIKKPV