Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1001908 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1001908 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14392
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (75.76%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14392

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (75.76%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F017968	Metagenome	237	Y
F029105	Metagenome	189	Y
F047558	Metagenome	149	N
F051918	Metagenome	143	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100190816	F017968	GGAGG	MKQTEFLTEPEKANNLATLSSQERLNLRETMRQTEALEWIRRFKKKALEEGGGEAQYWWQQTLADIAKRRGQPAADDLRQRMNRIKNETSRKS
Ga0209190_100190820	F029105	AGGA	MIDTKLHYYFDDVVSYDNGQTVENVKVGYDYYNAEDNYPYDYDSAEIFDVFVFDKQGNHITYDIPQDEYKRIMQEAKADFAQIQKDRNEI
Ga0209190_100190821	F051918	GGAGG	MIDQIKEYMRLPSAKELAAKELEMAQRKLLEALSAQEYAKRMGDYHSDRIKRLTAYLKEE
Ga0209190_100190826	F065786	AGG	MTKDDLINLLRITGAQPTAIDAVCAAYDAGWNDALDDYAKRLEPLPFGKDTIDSFSVFIRSAKK
Ga0209190_100190829	F047558	GGA	MVTKKSPAKVAPVKRRTPKPKVKIVSKPEAKKDDSTIGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHVAERLKKDLEAETVLVHKVALVVNSRVTLLAYGPKGREIALDGYNSTLFGKDATRNSAVIAMMNGEVYCDKLVASGKTSEWEEKQGVNFICRGSIPPEMGAFEGYVSVGFTKEPQDLGAVKTRINLASTEMAK
Ga0209190_100190830	F001538	GAG	MIESIKLFPTVQASGYPDQHDLAQKKLEKQEEVNKTLELAKKKQVQLQDIGFEIYCKKVTQERIRMEIFTNRKLDVYA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1001908

Overview

Ecosystem & Geography

Associated Families

Sequences