Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1001882 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1001882 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14494
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (77.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14494

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (77.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F020510	Metagenome / Metatranscriptome	223	Y
F031026	Metagenome	183	N
F043284	Metagenome	156	N
F043823	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10018821	F043284	AGG	MKLKAIVTKLNDTRDKALELVGKTIGLAAEAGTIIQQARTDGEDVRDLCEQAGITEEVGRRYEKVAAAQHKLTSGQADAGEMRQTYLRIGMLPDPITASVPADPKPFLWPVIKACQWLGNRGSKYISQDAELREQFIREAEPIVRAYNELKGSE
Ga0209190_100188218	F043823	N/A	MPMKKVKTNLTIDPKVKRKGEQLAKKNGLSFSAYVTTLLVRELAESKK
Ga0209190_100188223	F031026	GAG	MPGGLNALLLALSLALCSCATTSQTQDGPPPSPDTVSYFIYAWDKAERTNKPCPQAYRDLFAQSLKALSDSLAETERERARR
Ga0209190_100188225	F006891	N/A	MSTDQINELSERLSVVRESVARIETRQTVILDLLERSQASLGEYHGRLTAMERDAHTIKTKLWLVALVSGAVVSTAWELIKRRFGL
Ga0209190_10018825	F020510	GGAGG	VTLRDLLSMFSARVIGTYTPAQYAQQVIIARNNRMRWGMGQW
Ga0209190_10018827	F005502	AGG	VRALLSILAILGITSGQASNLMVDCRPEAKRIDVKKMKVRITGYWPGEDEWSSRFQSSTGTRLRAGRHCAVDPDIIPLWSKIKIMNGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEAQFNAMRLPKVATVEVTRAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1001882

Overview

Ecosystem & Geography

Associated Families

Sequences