Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1001862 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1001862 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14562
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14562

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008619	Metagenome	330	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100186210	F023109	GGAGG	MIRQATRYDIPRLLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFSIIQGRGFIFVDSHLRGAIVAYKTSNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFNERAEAMLKMGEVDIVCTSISANGPLIDYTRRGYKALGATFVRE
Ga0209190_100186211	F014737	GAG	MTTINAVTGSQINHAEFVKLTVGNAATVYTFCNAAAPITVGGITFSNLGALLSVGDVQRDIKATSDDMTIALTGIDPTNVGIILGNDIKGSLVEIWRGFFDSNNQIITTPTTQFFKRYQGIINSVSVTEDFNSEARTRIATCSISCSSMRRILENRLSGVKTNQNNWQFIYAGDTSMNRVAQIANTYFDFGAPPMTQTQASETTITVDNQGGGGDSP
Ga0209190_100186212	F008619	AGG	MSFQTIFEIQQSMTVNNRRMVGQQVARSGYITVAQYLTAVPWVFIITPHAYLYYPQVRDIIQAIDNKDRQLPETITFNSSNLSWFNKMRGTATEATLNGAPAANTQTLALTSNGTFKAGDFIMINGYTYKITADSAGSSVGINRPLIGTPSSGTTVYVGNACTFTVVAESCPTYTLNPMTDGAFVQWDAPFVFREYIT
Ga0209190_10018626	F024113	N/A	LVWNQKTYWNLTFTNSANGLPVDLTGATLNAQIVRRELSNIIDTRNGLTFDIADYNPAPAAIPLTITNIVAAAGSCTLVIDASAWSLMSNDPELEINAVDPVGYSGRVKVSFPVSGSTPADDSIIFLLFLVRSDGVIVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1001862

Overview

Ecosystem & Geography

Associated Families

Sequences