NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1001824

Scaffold Ga0209190_1001824


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1001824 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14675
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001332Metagenome720Y
F006988Metagenome360Y
F024977Metagenome203Y
F067726Metagenome125Y
F103251Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100182415F006988AGGAMTSRPYTGNTDAVHAQKREGTKTIVDYCCYLFGVTNIGIFNDRNMVGTTPPKKSVHATWRAVDLKGTPEQRIKLIDFLFTHRDILGIEEIHDYAGSYKVNPLGWGAGFRCDRDSWKVYDKNTIGSKGAQWVHVEVSPLIADHADVVHHAFKTIMGT
Ga0209190_100182419F001332AGGAMTTHEMIAAIAKADIAMKAAAWQIERLSEDVAMLRKALFELAYVAEEHGIYLSNMTKSTQDAIVAMRLGGFK
Ga0209190_100182423F024977AGGAMNEFMQPINPIRIVTGNDEWSFCTPVFAIAISNDHQVEYLTINGNFYTPEKVKFAEMNINGQWIRLETNHLRTPDPSNI
Ga0209190_10018246F067726GGAMDRYIISSIRVGEIGTAFIASPSDDIAWLLEGGFIQRSDTHPSKGAKLATKPDATENKKD
Ga0209190_10018249F103251AGGAGMTMQVQGLESTLKTLQKIQPEVKKQFFKDAKQIVKPAIDEAKNAYRSDYLSGMTRAWSPGGRPIFPWNVGAAQKGVTVQTSLSKKQDAVLIFAQKDAGASIFDMAGKRTENRLGDALNRFQTPSRVMWRSYEHHAGDIENQMQKSVNEVMDRISALEKLVIL
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