Scaffold Ga0209190_1001438

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1001438
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16630
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (51.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F010618	Metagenome	301	N
F016812	Metagenome	244	Y
F060914	Metagenome	132	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100143815	F002398	GGA	MIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNIIEKNKFDFFAYLDTIGIEHSKVGSYYFFNRKPK
Ga0209190_100143816	F060914	N/A	VQQKEKQLKRLIKVRSDISASIFPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNAKIIQDINILKEQGIL
Ga0209190_100143820	F010618	GAGG	MTLKDLILKLQELDKKYEQYSKDTEVVIAVHSKNEYNPEVNLDYIDEVVHPALDTFSGYLCRIVLCGEIEGED
Ga0209190_100143822	F105155	N/A	MMMQNFLKTSAAKQLAAEIKYLEWDQVTFNFYHKSFKGYNFYKRNISLNYWQYTVVDDITSCTFKVYEKEAKTNAKLGNE
Ga0209190_100143826	F016812	AGGA	MSTLYPELIEEDDEATFSSNLFKLYKLDERCGKLEAPNFRVIYLKDKKTQIHISNHFNSPTCIISYYNIKDKSCIDARTISKRLYNKIHDHYFEVKKKIF