NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1001212

Scaffold Ga0209190_1001212


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1001212 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18109
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009671Metagenome314N
F011483Metagenome290Y
F032950Metagenome178Y
F052471Metagenome142Y
F089862Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100121217F009671AGGAGMVRSRSRKDVPEVIKPARQATQWEIQSNAVLVELERKKGQHYEKWGVDRLITLVDIEFRTKVWLQMGRVWDALDMGDLDKLHKAVNGMCKGFDALEKWALENEIEPNPPIQFLEWKSVRGVPMVVVRTENDAVELQTHRKDINNGNIWTLEEIELFLQQPQVQTIIKAKALSPTARMTKFTPKEGFGQGSGFDDMEEDLDAIFSGEPYEAKYKPLNRG
Ga0209190_10012122F011483GAGGLNLGVRYMTYDLVAYLRSEIKELHHILHETQLALAQANDRLARRSEPLTEERVYTLYRRSLDWRQLARDIEAEHDIE
Ga0209190_10012125F052471AGGMIRKIRTFYGKRNGQRGNKVTTIDQGEAWLCEKCGEVIFFEHLVPKHFCKTLIKPVVHSDTESSLPP
Ga0209190_10012128F032950N/AMNTIIKFIIAAACAVSLMYFDSLDNKPKEKTNVGNNRMGNSDRDFRVRIGNLRLHRICVVSNKQGTRRVKCPVCEFTRTPDNRYMCKKIERIILATQIKKRSRR
Ga0209190_10012129F089862GGTGGMSIALEITELINRIAPAKEIAGGFMSRNEIIELIDKVANTAVAIGWTHGESMTRKRLEKKLELMEQEMTIIKEQMKALELDLLVAESK
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