Scaffold Ga0209190_1001109

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1001109
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19039
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (80.49%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F004547	Metagenome	433	Y
F006019	Metagenome / Metatranscriptome	383	Y
F011384	Metagenome / Metatranscriptome	291	Y
F060718	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100110917	F002037	GAGG	MNKIQLLFICVLAALAIFCTEKCFGQTTTIFAPDGKVTVCQFYKDVIVCV
Ga0209190_100110919	F011384	GAGG	MYTKLDDQRQAKFIVNYIQNNKDCSIKDIVQHCAISRTRLKYLESQKYFILPKWTYNNKLDKRFKNRVYVSVAVGREYGRWTGY
Ga0209190_100110920	F003066	N/A	MKKKPLAYLYEEYDVRSGNLLKSYLWSFHPSQLSYLNDLKNTTHHIKITPLIAGEPVEEYKGISKYDSKRLIESSEGL
Ga0209190_10011095	F004547	AGGA	MKQLLMAITLLLLWAFLYNYAEAKELPKEMSMATEAGEIVLTSEECIFKKQGLQGYDYAAYATDKGHPNHEGCWKSDSYEGKHAVYIFFPEINQTAVFDAKLFQPKANI
Ga0209190_10011096	F006019	N/A	MSFITEQNIANLYSALIEFPVFDEYKLPPASRVDFVIVHDDSMCGQYEPPEQGDPHIITISTARHSHLYPVLMTLAHEIIHMCVYLEAPKTDRYTSHKGLFLKLQKRVANHLGFDPKEL
Ga0209190_10011098	F060718	N/A	MIVLNILNWIGLTILKFLIVALLFSAMGFSLVFMYAMQYLTQALHYVDKNVN