Basic Information | |
---|---|
Taxon OID | 3300027736 Open in IMG/M |
Scaffold ID | Ga0209190_1001104 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 19117 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (58.33%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Associated Families | 10 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011740 | Metagenome | 287 | N |
F012434 | Metagenome | 280 | Y |
F016936 | Metagenome / Metatranscriptome | 243 | Y |
F017799 | Metagenome | 238 | N |
F024061 | Metagenome / Metatranscriptome | 207 | N |
F029363 | Metagenome / Metatranscriptome | 188 | Y |
F034845 | Metagenome | 173 | Y |
F042326 | Metagenome | 158 | Y |
F059946 | Metagenome / Metatranscriptome | 133 | N |
F100667 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209190_100110415 | F012434 | AGGGGG | MSPTAALTRALVLALTAPDQERADRAIALAESIGAGCTPRQIATAKRNASKLTK |
Ga0209190_100110418 | F029363 | AGGA | MENDDDNEMLWAAQDLRTMTSCKAEIAISRRVTIKPNAIKESWDYQITFGDILNRGAWRWECAQADTLEAAMDITRAQITAQGDEKARELLQLKDAAAKLGLKLVEATA |
Ga0209190_100110419 | F016936 | GGAGG | MNLELIHAELIRIREALEARPYAAGAPAAKPAPTSTKTDEVPLPTEVIANAGEVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAAVPTATAANIDEGDVSF |
Ga0209190_100110421 | F024061 | AGGGGG | MNTGEIKNQAVINNATEQFRSLLETHFVAIARAAEESFVEEENQTEPKAKATFAVEWDALKHTPTVTVKIGWSVRYKDETESMVDPLQSKLGLVEDAK |
Ga0209190_100110424 | F042326 | AGGA | MISDALILAAIFASGGLIGYIIGTARGRKRGRDEQWVESFLAYEKREKARRETDGRFKSKTK |
Ga0209190_100110425 | F059946 | N/A | MNKRKSDEAKRIQCDAMLAQFMPVRTIAQALRMSRGTVSERAKRAGMTRHYITEAEVRLLFKNRIGGVAK |
Ga0209190_10011043 | F100667 | AGG | MISISSDTKKLEYALARLADAAKVDLGLVVKQEAAYVAKAVMQITPPTGDKTKKGPTVATVTGGQITKTKASGLSTNAKEQGEKAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGRHETMGVSLGNEGGKKIRIYRKFWQESASIGTMRDFHFANRTERGRRRQVTRSLVGRWAVQDQMWVSEEAANAYLKHTQKKVGLAKAGFAAAAMACGVRVPSWIRRHMAKAGNAQVHFGPNPFVVARTTGNQIPDLQRVVDGALKIRYKITISKYRAILANRAVNLGFTRVGGAMPIKTAA |
Ga0209190_100110432 | F034845 | AGGAGG | MSASRAAYWREYNRRNAAKKREQHAAFRERNKAKIAEGKRAARAAGKVAPRKVAAVRAVKPTVAKPRTDEGKAEALLTLREKFAAFRAAKHGGTNE |
Ga0209190_100110435 | F017799 | GGA | METNNDNERRELEALRFSSRAARAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMGIEGIDAVEITPELKKLIYNPVGDLT |
Ga0209190_100110436 | F011740 | N/A | VNSITAADWAINCVTTYDAARGTAQLSCEIMERLVEMHEMRHTSAADLCRRLGTLADLSPSMFLTTVRLGSGDVHAVRQSFAEMAEQTGRTRQALHYEWAHEVAKVRMVFPELAQLMADYRQSTDE |
⦗Top⦘ |