Scaffold Ga0209190_1001104

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1001104
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19117
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (58.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F012434	Metagenome	280	Y
F016936	Metagenome / Metatranscriptome	243	Y
F017799	Metagenome	238	N
F024061	Metagenome / Metatranscriptome	207	N
F029363	Metagenome / Metatranscriptome	188	Y
F034845	Metagenome	173	Y
F042326	Metagenome	158	Y
F059946	Metagenome / Metatranscriptome	133	N
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100110415	F012434	AGGGGG	MSPTAALTRALVLALTAPDQERADRAIALAESIGAGCTPRQIATAKRNASKLTK
Ga0209190_100110418	F029363	AGGA	MENDDDNEMLWAAQDLRTMTSCKAEIAISRRVTIKPNAIKESWDYQITFGDILNRGAWRWECAQADTLEAAMDITRAQITAQGDEKARELLQLKDAAAKLGLKLVEATA
Ga0209190_100110419	F016936	GGAGG	MNLELIHAELIRIREALEARPYAAGAPAAKPAPTSTKTDEVPLPTEVIANAGEVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAAVPTATAANIDEGDVSF
Ga0209190_100110421	F024061	AGGGGG	MNTGEIKNQAVINNATEQFRSLLETHFVAIARAAEESFVEEENQTEPKAKATFAVEWDALKHTPTVTVKIGWSVRYKDETESMVDPLQSKLGLVEDAK
Ga0209190_100110424	F042326	AGGA	MISDALILAAIFASGGLIGYIIGTARGRKRGRDEQWVESFLAYEKREKARRETDGRFKSKTK
Ga0209190_100110425	F059946	N/A	MNKRKSDEAKRIQCDAMLAQFMPVRTIAQALRMSRGTVSERAKRAGMTRHYITEAEVRLLFKNRIGGVAK
Ga0209190_10011043	F100667	AGG	MISISSDTKKLEYALARLADAAKVDLGLVVKQEAAYVAKAVMQITPPTGDKTKKGPTVATVTGGQITKTKASGLSTNAKEQGEKAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGRHETMGVSLGNEGGKKIRIYRKFWQESASIGTMRDFHFANRTERGRRRQVTRSLVGRWAVQDQMWVSEEAANAYLKHTQKKVGLAKAGFAAAAMACGVRVPSWIRRHMAKAGNAQVHFGPNPFVVARTTGNQIPDLQRVVDGALKIRYKITISKYRAILANRAVNLGFTRVGGAMPIKTAA
Ga0209190_100110432	F034845	AGGAGG	MSASRAAYWREYNRRNAAKKREQHAAFRERNKAKIAEGKRAARAAGKVAPRKVAAVRAVKPTVAKPRTDEGKAEALLTLREKFAAFRAAKHGGTNE
Ga0209190_100110435	F017799	GGA	METNNDNERRELEALRFSSRAARAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMGIEGIDAVEITPELKKLIYNPVGDLT
Ga0209190_100110436	F011740	N/A	VNSITAADWAINCVTTYDAARGTAQLSCEIMERLVEMHEMRHTSAADLCRRLGTLADLSPSMFLTTVRLGSGDVHAVRQSFAEMAEQTGRTRQALHYEWAHEVAKVRMVFPELAQLMADYRQSTDE