NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1001104

Scaffold Ga0209190_1001104


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1001104 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19117
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (58.33%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011740Metagenome287N
F012434Metagenome280Y
F016936Metagenome / Metatranscriptome243Y
F017799Metagenome238N
F024061Metagenome / Metatranscriptome207N
F029363Metagenome / Metatranscriptome188Y
F034845Metagenome173Y
F042326Metagenome158Y
F059946Metagenome / Metatranscriptome133N
F100667Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100110415F012434AGGGGGMSPTAALTRALVLALTAPDQERADRAIALAESIGAGCTPRQIATAKRNASKLTK
Ga0209190_100110418F029363AGGAMENDDDNEMLWAAQDLRTMTSCKAEIAISRRVTIKPNAIKESWDYQITFGDILNRGAWRWECAQADTLEAAMDITRAQITAQGDEKARELLQLKDAAAKLGLKLVEATA
Ga0209190_100110419F016936GGAGGMNLELIHAELIRIREALEARPYAAGAPAAKPAPTSTKTDEVPLPTEVIANAGEVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAAVPTATAANIDEGDVSF
Ga0209190_100110421F024061AGGGGGMNTGEIKNQAVINNATEQFRSLLETHFVAIARAAEESFVEEENQTEPKAKATFAVEWDALKHTPTVTVKIGWSVRYKDETESMVDPLQSKLGLVEDAK
Ga0209190_100110424F042326AGGAMISDALILAAIFASGGLIGYIIGTARGRKRGRDEQWVESFLAYEKREKARRETDGRFKSKTK
Ga0209190_100110425F059946N/AMNKRKSDEAKRIQCDAMLAQFMPVRTIAQALRMSRGTVSERAKRAGMTRHYITEAEVRLLFKNRIGGVAK
Ga0209190_10011043F100667AGGMISISSDTKKLEYALARLADAAKVDLGLVVKQEAAYVAKAVMQITPPTGDKTKKGPTVATVTGGQITKTKASGLSTNAKEQGEKAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGRHETMGVSLGNEGGKKIRIYRKFWQESASIGTMRDFHFANRTERGRRRQVTRSLVGRWAVQDQMWVSEEAANAYLKHTQKKVGLAKAGFAAAAMACGVRVPSWIRRHMAKAGNAQVHFGPNPFVVARTTGNQIPDLQRVVDGALKIRYKITISKYRAILANRAVNLGFTRVGGAMPIKTAA
Ga0209190_100110432F034845AGGAGGMSASRAAYWREYNRRNAAKKREQHAAFRERNKAKIAEGKRAARAAGKVAPRKVAAVRAVKPTVAKPRTDEGKAEALLTLREKFAAFRAAKHGGTNE
Ga0209190_100110435F017799GGAMETNNDNERRELEALRFSSRAARAITTLEVQRKAIGREYGERIKKIKALILILQQRESLGQMGIEGIDAVEITPELKKLIYNPVGDLT
Ga0209190_100110436F011740N/AVNSITAADWAINCVTTYDAARGTAQLSCEIMERLVEMHEMRHTSAADLCRRLGTLADLSPSMFLTTVRLGSGDVHAVRQSFAEMAEQTGRTRQALHYEWAHEVAKVRMVFPELAQLMADYRQSTDE

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