Scaffold Ga0209190_1001098

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1001098
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19175
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F011391	Metagenome / Metatranscriptome	291	Y
F077020	Metagenome	117	N
F078386	Metagenome	116	Y
F080025	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100109811	F077020	GGA	MAQTMKWGQAYSVLLDVGAIANAFTLDSSTLDSTIDVLDGTTNFVDATEYVLSVSIKRGRQSQVDNMNVGICQATFDDRLSGRLFDPANTASRWFAGNQDLSPRRNFKVLAGTAELFVGKITDLDIQYEMPNLSFASITAADGLYELSKTTLSGFTPSQQLTSERVTAILNRTEVAYSTALRDIETGLATCGTVAYPDNTNVLSALQSVAIAEDGRLFANRKNEIAFDKRIYSTTATAVANFGGTAAMSVPMTAISVGYGQETLFNRVSISVDGFGTAQVVSDATSQGKFGVQSYSLDNVPLVSDAAGSALAVNILAKYKDPVFRFDEIATSLQASGTALYPTLLTLDVGSIVSVTKTYATGLPLSRTDNVYIEQISHDISPQDHRIRFGLGQANVITNFILDTSTLDNTLFGLG
Ga0209190_100109816	F003378	AGGAG	MEPTVGIKQNATIAKFLDLTQRLFSLFLANALPAVTTGAVIGISVGKSAIMAGAMAVIAVVQKLAQASVDGDLTSEEIKEAFSGAKKK
Ga0209190_10010982	F080025	GAG	MSIAICATVWGNYWERFGALFIEQMEKLNTEPDEIIISSPEPLKLPKHWIEIIQPHKKWDNWNDTISSARSEWVCPAGIDDIWFADGLDGLTDVDDDVDIISAAWMENGRLWAADPIGFENILHSSHNPMLGMTIWRKSIAHKIPYRQVVWNDWIQWMEIRKLGLKVEFKTKPVGDHIRHPDAYSIRGDANGELECEQMRAILRQHNVVPGVEFPPQILK
Ga0209190_100109822	F078386	AGGA	MRLLTAILATLTVITTSLGIAYAAQAPAPLTAVYSASQPPVDRLDPIPADQPIVFRHGDVSWLPALALEAGWTADQIPKLAEIVLRESGGCPNRRGGDMVDKNCNLTGVSEWSHRSDTSLLQINGQNFDPTRNPTAPICLQMKICTQEPLFDPLTNLKAGKLLFDYWEKAAGNGWIPWDPCNRTSTCKPSTKMRP
Ga0209190_10010985	F011391	N/A	MAKYQVVEGFIVADKQYPATIDETDVPDVSLLVASGRVILIDSSTSKADKAGDK