Scaffold Ga0209190_1000972

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000972
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20488
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (32.69%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F020860	Metagenome / Metatranscriptome	221	N
F022820	Metagenome / Metatranscriptome	212	Y
F024954	Metagenome / Metatranscriptome	203	N
F025679	Metagenome / Metatranscriptome	200	Y
F032572	Metagenome / Metatranscriptome	179	N
F035215	Metagenome / Metatranscriptome	172	N
F048090	Metagenome / Metatranscriptome	148	N
F071966	Metagenome	121	Y
F086551	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100097214	F022820	N/A	MKSENRLSKILEKRILQDEDPNTMAQIDKFLNNLEVVFVKWAKAHPNWKETEE
Ga0209190_100097217	F007359	N/A	MKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMSSLSDKLGKKFRGAKGGLKAVAMNRVMNTIDNIPTENFVRTAQVEDIYNLGTISAEKLDTDS
Ga0209190_100097223	F020860	AGTAG	MEITKAKKLKEGGYALYAVDPKTKTETQVGYIGEGLPLDGYLPKGLKIENS
Ga0209190_100097226	F010897	N/A	MKLINTTSYCSEKLKEIIKWCMPDGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPKYGKYLRPYNTGGRRGYLNVETYSWEEGLIELIAHELRHLYQWKKGKYYHGIKKIRKYNMGTRAKLSEVDASLYAKRKVREYRKSNFKLNLV
Ga0209190_100097227	F035215	AGGAG	MKSSEEIAKEINDRIAEYKVLMVEHDNNQSAVDELESAIHELDHLLRWINE
Ga0209190_10009723	F086551	N/A	MITINKELTTDENTFRYGHERLLVKIFPSTIGWKTMTATAEILEGEDKGKWTTIYLRSGLYNVDTGSLVWYR
Ga0209190_100097231	F025679	N/A	MTKTFKIGETALGGTIKVVIPKTLTNIKIDVISTNHITRGSCDAPYLINQYIYYSFDRIRIERDLFQIVSGYWSDQILAWINKSWQSQLAKI
Ga0209190_100097233	F032572	N/A	MNSTYQYIANYINKPTIFCYILDRVVNNNPYLFGGEYNEKLINKKVWMAKQIFPHCEPTQYTYFKTFKEAKDTLNRWGAKWERV
Ga0209190_10009724	F024954	GGA	MLIQALLSGIAKLLIIKEKKNLTKSESVIDYKYMKNIIETLVVGKYYQIENHIAICEMFNSTSNKKCLSRISGIGSVVAFYGEVTEVEMTPELLKQCEERKNGTMNFIGSFNESSKYKGD
Ga0209190_100097247	F011914	N/A	MISNNQIKALSEDELTYLYHCCKTEWDSLNMGYEFNWYIMKAFKNNMIHKLLDKYSANLTDENKPLIMQILNKLEENK
Ga0209190_10009725	F048090	N/A	MTNEIQHLATETCEEAYVDANAFFDYINSNDVVNSMLDALSGVYDSVETIVEVK
Ga0209190_100097250	F071966	GAGG	MSLLGIDFDIQGYIFKPFYLLLGALYFIVLLSLLATLYIFLFIRNTLEITLNNIEKNRNKYKRMK