Scaffold Ga0209190_1000872

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000872
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21514
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (84.44%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F014489	Metagenome	262	N
F015570	Metagenome	253	Y
F019101	Metagenome	231	N
F020664	Metagenome	222	Y
F034507	Metagenome	174	N
F043820	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100087227	F015570	GAGG	MNDKLDEAFDELEFDDVTDQIRNSTYLAEQRKISTGVTDGSIQRALVRDLTENLRSLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASFAAFVRAMKS
Ga0209190_100087229	F004231	AGGAG	MSVKPSDFKHEICVYLEGIGECLVCFDILSPGDELDADHSDDYEVDFAVFDEQDKHISYDISKKQYNHCENKASDEMRDITTQWRKEWEEISV
Ga0209190_100087230	F014489	AGGAG	MELKQQHISILKRLAHGASSMKRFTDKDTEVGNQGFHYLRYLNDLQNFGLALEIDEVWHITGFGVAKLAEQTPRVNKDRVAAGTTTETYDGADLKHGGNRVGASDFLKYPSKFGDNLVLPRVSL
Ga0209190_100087233	F043820	N/A	MKKAYPAFAGIEMTLNDARKHLDRLREGHLMPVALTTQALLVTGDIPRISHPTLCSDSNESTDDRDCEIQNQGIESRFSYSRYLGSTTNKGT
Ga0209190_100087236	F020664	GGCGG	MEKPEIKHNLIRFSEKEREIMRTIGGGNLSEGARICVMWGAHCWNLGLNTEMDLKHIGLVTVSTTDQHPNE
Ga0209190_100087239	F034507	AGGAG	MNTTQENSLLEWQPLWDAMEAKPNEWIDTTEKMYWEMLECVPPRAMIRRAFLVGEAHSDNAEGYPLYACFRKLGDEYFARYLTLEQFRGIF
Ga0209190_10008729	F019101	AGG	MLHEGRMELEGAKKTIEGVMADVKAIKGIWDWLLGLFNPKPKSKPEDTPKPLAKAKAASKKQQTYEEVELQTINEVGVQLGNFFDIQAQLTNYYASLEAESKEHYDPTQNTSKKAIERALVELQMENLDAQIREQMTVYAPVELKAIYTRFLKMYAKIQQEQEWARSEEVKKLRLQRWKQEQEEIFVIELVSGGVAVVFISLIFGWLMWQLQNLSGGF