Scaffold Ga0209190_1000625

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000625
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25644
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (64.44%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F027777	Metagenome / Metatranscriptome	193	N
F035218	Metagenome / Metatranscriptome	172	Y
F081046	Metagenome	114	N
F086811	Metagenome	110	N
F088509	Metagenome	109	N
F093506	Metagenome	106	Y
F104721	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100062510	F035218	GGAG	MPLTKNPSDIDSFIFASGRMKMYRAGLAGSYTKTIGTGGVATLANTGGFHLNLNAGSSASGTSKIGYFDPTAALMTASAGKIDYSKRIRFSMGGMMYLASTNSVIRMVFGGTGNATDAPLAGVNGLTIKGFGVEFALQSSIIQARLIGYNASYLTPTSYTTLTNGFGLAASDNRFFGVVIESDGAGNINLYGADSSINPNINIGQVPLLTLTGGPTNDTSTNRFGPEIHCSNSSSSPTASPSAILQSTHWLLDVQ
Ga0209190_100062515	F104721	N/A	MQEKILYTRNIKLASVLATFGIPFREKEPMAVIEDADDNNRRSVTFFFSDLPNGLGGKIVDMWEKGWSAITNYDDPIAYCRAVLENRERLLDAMNNATPLVKKQFGKATLLVSKNASPELRKKLSKYL
Ga0209190_100062521	F093506	AGTAG	MAATILSNISSFDYEPDIITDNGRDGISSFQFSVVGSFSALNSNFSLDQDVSGVPDQPPGSFRVVRRNMSHIAGDTANGLYRLQVSAEGGTGDNSLYILETSYQYQKEIVTGFVRLPALDAAFSYTCEWLSPTATITTNSQTEDVTAVQDRVKTIVGSLPVQIIRNKPTEVAFVGTVQYPVFGAGIDENVINIIGSSVETAGGLFRVRASATKGQIQ
Ga0209190_100062525	F012113	N/A	MNQILAFVQSQDVFAWVGALVALLSAVIAVASLIPGDEPENTLQKVVDFLSKFSRK
Ga0209190_100062528	F011284	AGCAG	MTSEQSVEKTQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEENEGTKLWEMPTARLVEEAIAEATDQMVYLLSLRQQMHIVMELAKDGCTDETLTNPRARECCHLIYTTLTGQSKPPL
Ga0209190_100062533	F005846	N/A	MTSFPLPARPQASAVPASHIEFKKDTAIEGKANGWRGLFHQKTGIGYNRHGKIASNHNLMVERLANAGIKAPYIDCEIMGMRTKTGKGTIIVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNYQNNKAGEVIWEGFVMKALDDGKYPFITNPNYCSPAWQKQRIRW
Ga0209190_100062535	F027777	AGGA	MSEELPTFWHEEPANKKRPNETTDEWVVRLFGAFPDTEFDQRNDFRSLNLPVRGSREDRESLGDYDYNQQPIRRMK
Ga0209190_100062537	F023833	GGA	MRYRKESPKMKSHSDLIQDIIDDAMRKAAALERERCAELVQRLADGTEDQVIQDILNEVVVALRRLG
Ga0209190_100062542	F010463	GAGG	VNYPQDMVLAATIHRVKMCEDKLREFEQMVSTLTATMAQNRAELASQGLEKLVMGVTTHLDIPKELVPTYGKAGARRNREYSTVKKRWTLWKHQLESGMSMNELARAWGVHPTTILFAKKQNFIVRKAKGGSR
Ga0209190_100062544	F024265	N/A	MNEAYTTLEAKANGILADRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKCE
Ga0209190_10006255	F081046	GAG	MTAKTIKYSQRLGDIIRCLPACKYLADQGHEVFFDCLPQYHGIFEMVSYVKVGNKGDVIDLEIWPNKYQEYRFSGKTWTEFVYAHPDINKADPKDILFDRLDDAPAKGLPETYNMVAPFGISQGHKRDPLQIIVEARKKCGSDNFFVLCQEGTEIKGLQTYTAPSIPELARAIRGANEFWSIDSGQMAIAAGVRKESKVVYFPQTIEPFDKDNIFIWDSVEIN
Ga0209190_10006257	F088509	N/A	MISIERQIENGLATALADISGVNIYKSDTEGQRLLPSLVIQASIGSEEIIPYSGVFRCPATITYATRADTTTRTDFDAKFQDILQVMYQEPNLASVLTTATLKVFLANVISESPDIRSENRTWAKTIFLDISCTSI
Ga0209190_10006258	F086811	N/A	MISPQFKIEDALASLLTPISGLNVCVANRRGLRLFPYATIKASIGGQQIIPYSGVYEISVELNYSDSATRTTQAIFDDNYYSIFSTLYSNNNTLKEKVQDKVTDLKIFMGRITSQAPTIRADKRAWQRGLTLSFIVTPDPTADGTRNYDFSDFLNSFYLGTI