Scaffold Ga0209190_1000615

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000615
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25895
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (80.95%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015467	Metagenome	254	Y
F018362	Metagenome	235	N
F023588	Metagenome	209	N
F024783	Metagenome	204	Y
F032578	Metagenome	179	N
F057369	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100061511	F032578	AGGA	MNDPIEGRAYDVRNEDIQAINFIKTQIQSLDHDRRNEYATLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKQQYIKAGEALGHLNAQQAELFAQICYGITADQVTIQYIPEQNTFSVQEVRQ
Ga0209190_100061516	F015467	N/A	MRNGTQNSNLHPRSTRVGLGSFAPDWSLNSPHTFLLGCGLYTHQPSKIGQTMRRITATIVTTLTLLIGIGTAHAAQAPKPTHSRSVNRTEVISREAQPTIKFRHGDISWLPQLAAEAGWPPKTWKRLGQIILRESGGCPNRRGGDIVNKDCEVVGFDGSNHRSDTSLLQINGVNYDPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLFKATGSDWSPWIVPEGGW
Ga0209190_100061517	F023588	N/A	MTHPMVLVTWADAHSGVATWTPIDSLDKDEMLVFTCGFLLSTVDGGKPDHITVYQSRTMEDDIDHVLHIPCAMVRKIAICTPDQLG
Ga0209190_100061520	F024783	N/A	MMDWGIVLAALITAVGGAMTTLMLVMRKENTEDHARVVDALDMLSGNVDKIGTKLDSHIDWHLKGITNGETIAGNKVAKPKRNIKAR
Ga0209190_10006153	F057369	N/A	VIEGLKMMIEDPIAEFIEAAADGLCTAYVVVATVERIDGSQSFWITTLNRQTSSTTLGLLVSATSAEQYRIAKSLTQGM
Ga0209190_100061531	F018362	AGTAG	MAGLSRGGNFSSRDDFTKPVKIEGIMEYLREQSKTYPEFDKQARLAGQSVAQLLVVAATFEAASVTRNRQALEVMKGMKASRDRIPTIKLAENSAFQSKSRKFSSSYNIKSHRRVKRKVTRGDVFFGAEFGGGSHGSSNLTVAGAKSRSGTEMPRKGGGRTTQFLRHRGRSGYFFWPAVRKNKANIATEYLAAIQKVLNVLADPGTGKSE