Scaffold Ga0209190_1000523

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000523
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27946
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (43.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F004206	Metagenome / Metatranscriptome	448	Y
F007030	Metagenome / Metatranscriptome	359	Y
F010533	Metagenome / Metatranscriptome	302	Y
F018915	Metagenome / Metatranscriptome	232	Y
F022396	Metagenome / Metatranscriptome	214	Y
F091372	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100052310	F091372	GAG	MNIKYDLNRTKLLNEAPRLIKWAIDHGLMSYPLSQKYHDDGSLDPGIEEEIHVDPEQYTPEFCQRAYELRQLGMTLDDTAKAVNVSRGSITYILAKGHEHYLSKQRANLEHEQSHSSNQH
Ga0209190_100052311	F007030	AGCAG	MNDPFIHAPQATAVVHEPTTSGTRPSIHVSLYAYGGISAACLMSWVGLTATFSTSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWVQIDHDIEFDPKDIIRMAELAHEHQATVCIPYPCRALPLRPALRIDTEHVKALRMQTSDAECATELVPIRMFASGCLAIPRRCLMSALDWLGGSEVPNPYRIDWCKDVRVDQFPTLWMPFAMDTLPGQHEYLSEDYAAAVRLSLCDVKHYAMQPKKHLNHWGEYPYGFKPYAG
Ga0209190_100052319	F022396	AGCAG	MNVGSNRQLAGEYGGRYISSASGTVTGNFQAIHALEITILGATVSNITNFPAGVTLQAGDELPGVWTSITISSGSVVAYNRKYG
Ga0209190_100052323	F001272	N/A	MIKIELTQEQANNLLQLIDIAIKAGGYQNAKVGVPLADLILAAAQPKSE
Ga0209190_100052325	F018915	N/A	MNWIYQILKALLDWLRETPPTDVQHGNAPKALKNDLADRIADLPGLPGDQGGPGSKR
Ga0209190_100052326	F010533	GAG	MRTVTYDYVLQRACELTGRVFSSLTTEESNLFRTFISMSLRSAWECFNWPEQTVYQQEFFAANYSAAQVYSGGMVVYYPTEQKYYQYVGAINSNNPPTLNGPGGTLNSQYWGLAQPSYGSTATWDTTTVYNIGDIVLYPEDQEYYQLFATASAGTVPTNAVYWGRLNKFLRYVNQQLNPDGTTRAVEIGETFSVWPSDPRITWRQHEPAYTLIDAGILIGEQLPYVWIEFRKSPPLLSTAVDASAYAFPYRFCEVCSLKAAGQMLRVDGKVDLGNTFLELGEVELTKEIDKVALQEKYVRQIIVPGR
Ga0209190_100052329	F004206	GAG	LIPLVTDYLLHKLPDSFKGWTREAVEDYVMFHAQQNTLKVALQDGHVVAVLVGWRQMGPEPQAWTWQQSDPNGDHWYWHQFAADCALFAMAVAAKFFHDRPESAILPAIGYRNGKLTTYKKGSMPIYRAASKHL