Scaffold Ga0209190_1000515

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000515
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28206
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (92.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F054866	Metagenome	139	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100051510	F000857	GGA	MNDDEVRINEEYYSGGILEAGIDGVFRHNDKLYNEVKSGTWSQTFNTPNIDYKVGAVDGVRYVQYDQKNVEVIRQKCKELREFYKEHGTDNPFFAGTAHMMELPKCFAHEISSKWFNNRPWELIKRDKADKILFYAIVNEHYSDFVCHPTGKIPLPYNPTIPTK
Ga0209190_100051515	F004695	AGGA	MLDKQNIVVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFNEMDGEQAAQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPDESEQVQNTQEEMSEAIRASTIYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKSQFPYVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVECCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPNKHIYEFSPMQGNLAYVQSSMERFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRDVLYIVWKTLIQYSDDYNIQQLAGICGKGKPFMDAISMDNYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQAQFTQMMMQLDPSAPELFAKVRRPFEDTLRVLGVKDVDAYLPTMEEAAKLTQAKSQQGPSAEQKEIQSKTDLNNAKVQESNTISALNIKKAEDIDTDNMFEALAAKRGKLSAVEID
Ga0209190_100051522	F099270	AGG	MSTNFLYAQAPNRKGNVSKHTVSKSGGCTNVTAAKHGTATPKGNQGAPKASGNVYPVGNKVSVSTHADYCGTIKNDGYMNSDRNNYLK
Ga0209190_100051524	F001915	AGGAG	MEWRLAHPLDDVDDIVEMADTIFGQEADGILTRDRNVFRKHVTVTATMQLFDKGREFLAVCRDVDTLVAYCWFDRGGYTTYANEEISNAKFHHLDLSLPVRTRVRLLNEMIDQHILWASSWGIPVICSTSIRAEHNGFMKIHKKRGFTVNGSYAWGRTAELLKDMK
Ga0209190_100051525	F054866	AGGA	MNYTIKHGSIAALQIVTLPTGEELSVTNAADGSEINLLLLPLEVRAAVNRQFGMIFSLPYAKRQSFIDSSIPFIVEA
Ga0209190_10005159	F005087	AGGA	MALFIQSANALVSRIASWVGAIPSSIGINASSYNSSTGVITCASNPSSLVLIGDFIGPNMMGPFAAVLAVSSSTITVNDPDGVWTGITYPTAILKLPSASALEIQACIQMAELKMRTIELPALRSDPYASVSPSTLTTNAQGMAPIPSDMCFPILFFQESPASNQPPGATALGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGDSVVIKAYYQKTFPFLFSTTGDNLNPIVQSNGVLASFPEGYLYGTLSAYYDKNKNVEESQKWDARFDASYGLIEDQNYKGKWRGGDQHLTSEFQPRNYRYSFK