Scaffold Ga0209190_1000492

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000492
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28742
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (33.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F019318	Metagenome / Metatranscriptome	230	N
F020694	Metagenome / Metatranscriptome	222	N
F023103	Metagenome	211	N
F025459	Metagenome	201	N
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100049216	F008495	N/A	MAEYHGLFAMVDYCRPIYPQNDHSGFDRIINLQIWPDLHEDFCASPLGWSDYVYGLLPEGKDIDRQIVLNSPAIVTPPELKSWVLCFPTGFSQDKKIEPRDVMAVAHHVANGRPVLCAGKAAHGMAEFDSIEYMCAYIRDANEVVTINTSTSILASALRKSWVHISDSPKHDFTHPNQRRIERKF
Ga0209190_100049217	F020694	N/A	MLDIFTSDLAAMLDELPVVVTFGDATFVANRTTYRRDNSLADGGFMNTSATNITAIYSAVVQTISLGDILVIGGTRLRVTSAELSQDAVSVDFTLEDINK
Ga0209190_100049223	F009267	N/A	MKKPTEQEKLKAQRLVDLICENQDLVKDDEILRIQAMEDGPKIVNGRILRPITALTISWMQRNEVFSGTMDLVWKSAAFAYLHSEPYSAIRSVVNDRSAFINAVDSWIENNMIHHLEISAMTDAMNAAFELYNASATQSKEGSGSGN
Ga0209190_100049224	F023103	GAGG	MAKFKFESVKFEQIMADYAEIREVTIPDAVSLNARLLCVELARRTQPFGNDETAGTTRVKNDIGKIIKPPVQLLAMANKVENKKIAQRLKSLIMNQRYDVVETIFRNLGFLNKWTGLEFLDNKGAIKTHHQDARVKPTGRTKTRGSKLFISSGSELNTYITEIQKRVGISKGGWAECASQLKKVNKGGLLTGFPSWVKKATRNGSGSVQDLTSNIKSPKVTLTNNVPWVSQILPASEQLNALSVVSTKMRNQMNMILKKRQKTLVET
Ga0209190_100049235	F048162	N/A	LKKKRQPTVESDRTEALAEAKRLLSEHYDCGFTIVSWEQGGETMHGEFVFGNRYAVEGLAGDSFSILFPDDEEEEEDEDA
Ga0209190_100049236	F025459	AGGAGG	MKMTLEFDETERYEHEVACKALDILILVDDIDQELRSALKHESGEFAELDEDTMEAVRAWIWKERSDRNIPELK
Ga0209190_10004929	F019318	GAG	MLASLLIATQGLMPSPTPLSIGVQGLLFISVVPPVPINPIDLPGGGGRGREERKVTATVRGVRLVFSVANVEACAGSSIQIVGSSCFANAGDAELCASTSTTVLGARTHASANRPEIRFSMSFDVIGGEEENELEVYLMAQAAMGLMDD