Scaffold Ga0209190_1000431

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000431
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30662
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (63.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001957	Metagenome / Metatranscriptome	611	Y
F044967	Metagenome	153	N
F051684	Metagenome	143	N
F085390	Metagenome	111	Y
F096618	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100043110	F085390	GGAG	VNDFLQALGPFVWGFVLGYFWHPVWTLCKRVVEEAKLARKEWRNHDGS
Ga0209190_100043111	F044967	GGAGG	MEVEMIEKTKDRFDLEQEILECWKVTADIQMYIDQDSATEDFKVLAEYYERKFNLLWNTFESMIHERKM
Ga0209190_100043113	F051684	AGGA	MYAWIIKHQDVISGFVSGVSLMVAADYFARGDMAYGSLSLFVSVANLLLSGKKMGSHGQS
Ga0209190_100043115	F001957	AGGAG	MNSVDMATNLIFRAKNLQEFTVTTELPDDFGFRGVIPFDMQITGNILEARVWAVDFNEAVDRLNEFLHS
Ga0209190_10004313	F096618	GGAG	MSRMSELDLDIRYLLEKGRTAMDIARELEIPVSWVYEKPEAQEPEEVLSPFTTINS