Scaffold Ga0209190_1000413

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000413
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31411
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (39.58%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021297	Metagenome / Metatranscriptome	219	Y
F026860	Metagenome	196	Y
F042341	Metagenome / Metatranscriptome	158	N
F074557	Metagenome / Metatranscriptome	119	Y
F076091	Metagenome / Metatranscriptome	118	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N
F097349	Metagenome / Metatranscriptome	104	Y
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100041314	F101160	GGA	MTTPYNSHSSAISAMNNLIDKHVPLREAALHEHYMKADETRALLKAMGCWPAKTGRPSEVRGKKPKNGKTASEKGREAYEWARKNNATYTEAAERFRISADSIHSYRQYRKLPKLKTK
Ga0209190_100041317	F074557	AGG	MSLVLALSAALLASEAIPEAVVQAVEQVESSGRGSKTPDGDGGKAIGCLQWHSVAWKDCSAIRLKAGLAVYPYADAAVPTKAREYARTWLTVLKVRLAEEIGRQPFPGEIWLAWNLGWSGFQRYGFSWAHVSRVKFDKARQVNTVAWGLPKRPAVSR
Ga0209190_100041318	F026860	N/A	MSNPADILARLMRELTASAEDHPCPAGFSTVDDIRVELRMAYTRNASSRAYDLFRRGLLERKAHQFKAKTGQCHKAYVYKPVSPYRSIREASEGLFAHQADTVPKGWVRVVDYCLSIRVSDVALRGRIARAGLKPKYYKTPRGIIGLHQNAYYKKTELDRLFAKR
Ga0209190_100041327	F042341	N/A	MSRPRPKSDPPAVQYGEPHFTFRILGRVKPTHDPKCPTPFGYCWKGFGDIHCDSRQSEEEMIDTVAHELLHDALPYLDEEAVEKAANRIASAMWKLGYRRTVIQ
Ga0209190_100041332	F021297	N/A	MSNSVSISQGNSFACVFTWTPGASGPANLLATTLTSTLEDRCGTAYTLTVTTANDGLSFTVAYAGSTADWALGLARWDIKFVFPGSTVSRTEIFRVNVIDSVTV
Ga0209190_100041339	F082694	N/A	MGTKSSRQILEAAIASHLSAQTELAGVYIYTGDGADTNVLPKAIVLCDSARSPNDMPQGLGNYSCGTRVTVFSSADDNTLEEHRARCAAVAGAMQDLTAIKAVFVAGGDALCYDVTPQSEDEGVNERSWASVFGYDILIVVNPV
Ga0209190_100041341	F085382	N/A	MSIYDTFLPDFQGLLADIGVPATVGEYVFLVGLSRPMNTPRFEAGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATLDAGVPAAFLGEGKKFTVNGQVLRVKGQSYKLTSAVIELDCIDDNQ
Ga0209190_100041346	F076091	N/A	MALGIYVGVPEETLLAYKAQAIADLGLAVTSYSDSGTSVNKTAGLAPATRILEINYALSRIDSSRYGGAHTSIQVNWDSRVDL
Ga0209190_10004136	F097349	N/A	MNHKPTSITDPVRLEAAKDLILKHRAKSGKQSQYELYGFLFGLRVQIDRVDHAPTSGEFAPLIGKKRIASLFTAYDLVVEFRGVWKTDAEAKVIAWEPASNA