NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209190_1000398

Scaffold Ga0209190_1000398


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000398 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31873
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004362Metagenome / Metatranscriptome442Y
F006502Metagenome / Metatranscriptome371Y
F060717Metagenome / Metatranscriptome132N
F063629Metagenome129N
F087962Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100039825F060717AGGAMHLADEQPENVCISCGEKWGIHHLKNTESHRIWIDQCDVCLKLRPVADVSEYGFLREGWDGEEVV
Ga0209190_100039829F063629GGAGGMDNVANTQQSAFDRLIEVFGTIKGICAAIGVKYVTCYAWKMRNGIPAKWHKAIIEASNGKLTESDLA
Ga0209190_100039841F004362N/AMLNPQICSIIKDQQQTKNTMDERLRNWAWYVTWGVIGPQPDSTCRSFEKNYVPELGNLYAEAEPTYEPDQKDGDLIEQAIKGLPLQLRQALKLRYVSHPYATLSQIAQAARTTAHKMEVDLANAKRRLQHELDKKAKSNDYKSLLKLQDSQQNK
Ga0209190_100039842F006502AGGMKDKGITVMVGLLGEKPKMGGKEEGGLLSEDNSSCPLATQDADINKGNQKKAILTANYGSKKDGEGKCKACEYFKTDLDCGIPKDMGYCEIFDFTCSKENGCDAWEAIGEEETEEMED
Ga0209190_100039851F087962AGGAVNKAERANTYLRDEFFIEVIENQKMLYKNMIFGSADHDVEGRERAIVKLRAIEEFEAELQSMANQPNIEKSRIRIF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.