Scaffold Ga0209190

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1000392 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027736 Open in IMG/M

Scaffold ID

Ga0209190_1000392 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32015
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (83.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32015

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (83.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001713	Metagenome	648	Y
F001739	Metagenome	643	Y
F001799	Metagenome / Metatranscriptome	632	Y
F002099	Metagenome / Metatranscriptome	593	Y
F060706	Metagenome	132	Y
F067527	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100039211	F060706	GGAG	MSKLALDDNGQLSQIYNLGTTQVMTVTASSVQSTAIASDCTIIRLANGGAAHCHFQIGTNPTASITTSAMLPANAVEYIKVTGGDKVAVIRNATATDISITQVN
Ga0209190_100039218	F001799	GGA	MDKHLLAQWAKNLLNDDFFKEVLNNLKNQQISVIINTSAEESDRREDAYRHIKSIELITGHLEGLASETVIRDKKWKIL
Ga0209190_100039232	F001739	GAGG	MTTFTTRITSMYTLNTPSPDYVVNVLYEVTGVDGTYTASIGGNTQFNSADQEGAIVPYASLTESIVIGWIPESAITSAQACVQGQIDSMITPPVSPSNTALPWSA
Ga0209190_100039236	F002099	N/A	LGDAVKWLIALVLIFSLHSTGQDLCSVREFYNISFSRHNPSERHQQLSIWLTNNAPHCKSQDLVVIWNNVSAWAGTADSAEIRSKIIKGYEDAIAREKK
Ga0209190_100039237	F067527	GGAG	MIIPSKWYPMVQPRYDFQTVVFDKAAEKVDDDYRLAMKAHKVELAIAELEVELYNKKARVNQLEMEMFTNHKLDLYI
Ga0209190_10003924	F001713	AGG	MKFEFDTTTGEGSVIVTVVMSCERDEEGTYNENIDEVWFEGRNVMGIFTDKQFQELEIEGCMRLAKHILEEADEAKIAAYEG
Ga0209190_100039241	F000166	AGG	MPNIPTPEQAELFAQSVRKWQQVLSLGDWRIERGIKPAKAAMASVEFTPNARLAVYRLGDFGAEKITPESIDMTCLHELLHVFLHDLMTVAQDPKSSQDEIEMQEHRVINLLEKLLSKDSYGKQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209190_1000392

Overview

Ecosystem & Geography

Associated Families

Sequences