Scaffold Ga0209190_1000349

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000349
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33953
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (84.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027177	Metagenome	195	Y
F063684	Metagenome	129	Y
F066712	Metagenome	126	N
F073247	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100034918	F027177	GAGG	MKFLNWLKKLYVPATCEELMARELDASRRDLLLAETAKDYAESMVLYNVQRIERLKIALKERL
Ga0209190_100034921	F063684	AGG	MRIQTATISTKELQQALRDFCAANGGIPDTVIIQSYSSQIVVSLRPGGLITADEINHSVTGAKK
Ga0209190_100034925	F073247	AGCAGG	MSAPERCNCGAEDCPRCYPLNRKQATVTERDRADALTEIVEATMDYGRYPSRGRAQVDLYEFIADHLDTSYAFELVVAALGKNNQALGHRIERLYTQVEQMLKSHYADTDMVMEYAQDIANERSE
Ga0209190_10003496	F066712	GGA	MNSTYNFNPNDKRMQLAALLQDPTQPYKRYSGPMGAPKSGGGGMGSFNDMMMKLIMQTQPGAPVVEKSTQYDPNSQNFTPSNY