Scaffold Ga0209190_1000257

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000257
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38564
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (76.27%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Associated Families: 15

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F004760	Metagenome / Metatranscriptome	424	N
F010449	Metagenome / Metatranscriptome	303	N
F011208	Metagenome	293	N
F011649	Metagenome	288	Y
F012569	Metagenome / Metatranscriptome	279	N
F041081	Metagenome	160	N
F058800	Metagenome	134	Y
F073257	Metagenome / Metatranscriptome	120	N
F085343	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100025711	F011649	N/A	MDESATESGSTIEKSKNGREIFTDKIAEEIISACGSGFTLEKAGALVGVNPSTIRTWSQRKPDFARRVETARKKHELSLLRDIELAGQKSWQAKAWMLERGYNWAQPSARLAVTQEHTHGISGNLAQLLAGIAGRKKAQVIEAEVIAEKPALPIRDNSYCATDGTQTIVTTMPGKIPKPRKVSMRRRKPRKESLAKYTTTPPAQPPATI
Ga0209190_100025716	F011208	AGGAG	MDEKEVIREYFSRLGKRGGSVKGPTKARALSREHYQTVAQAQRERWDKWRLTNGKPAIKR
Ga0209190_100025722	F073257	GGAGG	MNKVKFRWGEETYTLCVTQDDCWLEDGPSDISDRMLKGMDELAMENGMLPPKGLCAECWKGTYEAIVEDYHIGGETIKDLDLERCPRCRHTILPWQSVERVDRILEALKKPAELCPTCRKSNTIEFTGDLKMDSVCKLNGEPFTAPNITRTQCPECKDEFFTMSECKKIDAAIKAEQERRGIEANG
Ga0209190_100025725	F002826	GGA	MEVEAKDRLKWACDILLSARGKLAVERDRANHGHAIDIIQIIALVDAAALVCKEISESE
Ga0209190_100025726	F004010	AGGAGG	MPLGKDVSKNMHELAMDNKKKGKERGAGGTPRSRKQMIAIALSAAGKSNKSPRKFRMRSG
Ga0209190_100025731	F003304	GGAGG	MKRALVTQAFGDDWKKVLDLTRPRMEAYCKRHKIDFLALEKPLVEPVQYSKSAIGNIMATKGYEQITFVDSDILIANDCDDMGAEVNMFCAFDEGAFLDRKYHMGKLASAFGAQIDPRFYVNTGVFVISSKAAGVLSMPPLGLLPNHFAEQTWMNIMIHLWNVPLQELDPAYNCMTSVESHFGLDRYKDAYCIHYAGQSGDMPKLIEQIKSDDAKLVELGR
Ga0209190_100025732	F058800	N/A	MKAALSWLFYCLGDMTSRTIMKIGIGYGLYKTLMLWSVDMDKKFDVWKEVKPNRRNKE
Ga0209190_100025733	F041081	GAGG	MIMEDVGVDFEFNGKKYTAYGNAEIDTITEDIGPVGYREHYYAQVVNNVIMSKIEISTDTEYIKNPDKDLLEKADDALCRQAEEDFDAGK
Ga0209190_10002574	F001459	GGTGG	VRKLKAALAFIRNQEWVDEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNGTAVMKKSEALADACGYAKGFRGCVATLESLATQKLNSAIPGYGDGSDEQVVD
Ga0209190_100025740	F085343	N/A	MKTIQILLMTVLASVALADDEEEINDFVGGVYKGSGTVHTAGNVIMTEEGLIFKSGSRFIYQDGRVCQHVGSTYIREDSSVVVRAGNAFVSNDGLTEKVGSTYIGNVNSFTAGSTIVRQSWASR
Ga0209190_100025746	F002149	N/A	MTAIEYIEKSGVPEGMWHNLPEWFGWFEKQDMVGIVRDGDEIAGVALARCVKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLLERFGPRKRITFNRSGKPKEYDYMKFMRKALR
Ga0209190_100025749	F000635	GAG	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTARLITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGVAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0209190_100025753	F010449	AGG	MSEEQVWELEIRLARMEERQVQLYAMVERSLAFHGDVANRLSALEHLRTRVLAVAGLIGLVCSMAWDVLKNRFNG
Ga0209190_100025755	F012569	AGGA	MSRALDKFQGQYGFSVGSTGTATPGYWAIQMLTDTTFSSISGRYDGTLTGITIGSGNVIYGEFDSYTAGTGTVIGYKAG
Ga0209190_100025758	F004760	AGAAG	MPVYQYEDTRNGKVIELEKAVAERDYVPRYLKRFTVPQRLALVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRK