Scaffold Ga0209190_1000197

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000197
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43376
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (85.53%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F005558	Metagenome	396	Y
F012770	Metagenome / Metatranscriptome	277	Y
F014237	Metagenome	264	Y
F020863	Metagenome	221	Y
F029046	Metagenome	189	Y
F031484	Metagenome / Metatranscriptome	182	Y
F060868	Metagenome / Metatranscriptome	132	Y
F085348	Metagenome	111	Y
F105020	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100019710	F003658	N/A	MFDLTGEPTMACICGCLMFEITVMWEQEDRTIGWYDLRQKCKDCGSISTAPTPIDGEI
Ga0209190_100019717	F012770	GGA	MDFNELGPPESYCHECKEQFDNSFDLIDHTLEDDEEFDPYYVLPNGFKLLLGSLLRFMYHHRDDPEKIALITQSTYVTLFASEMGYDMVDELVEDMVVKSELQNFDEELKKLLTKDDDGEGGA
Ga0209190_100019725	F031484	AGGAG	MNTTKLVAMATTYARAAVPAVVALYAAGVTDPKTLAYAFASAFIAPLWKALDPKAKEFGLGSKK
Ga0209190_100019727	F014237	AGGA	MVTFKNVMMRIGAVIAAEALGVIGAGSLVGIEVWQAATLAGALGAARVLEALARFFLNDGSLTAEEINAAFAKVDKKASE
Ga0209190_100019746	F105020	AGTAGG	MHSHISKVLEWGFSESHDFVATLWGCVLCDETSAKPFLTEEDIDIDHTQCDEDCFGCKARGLQLNAGDATRDIPDKKWNSELASYRKARESGIQPAGTTHAHVEQAYRASETLGKAYDADSMPKAKDINKNTAAVMKEIGAI
Ga0209190_100019747	F060868	AGGAG	MANYTFQTPYVLEGPSGGHRLFYFANLRKGITIVKSGATYSQIRYPVDEDLNDYDVVYRGGYNHTVDDAAKAELIAANVGVTEANFIAQ
Ga0209190_10001975	F005558	AGGAG	MQQDAISWGELAELTHVTQVERFNFCTCEDNEGNENPYDDCPETEEN
Ga0209190_100019762	F085348	AGGA	MSQPTGVALRVTGKDGHISFPAYEAWGWEKVNEIIQGTLAIEHVAKVEIVDVNIREGM
Ga0209190_100019765	F020863	AGGAGG	MSYQTKMEDLRRLVAVLEELVQPLLEGEVLEDAPYELMKKPHLVLQEGSKTYGRAFRIHFTGGSKYGSGHWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGQMIAEREGK
Ga0209190_100019766	F029046	GGAGG	MQLQEVDTIQDLKVWVAENMQGATVEEGEGGIVIRTNLGSSMGGYLFEREAE
Ga0209190_100019773	F003658	AGGA	MFDLTGEPTFACICGCLMFEITVMWDEEDRAVGWYDLIQKCKDCGSISTAPTPIDGEI