Scaffold Ga0209190_1000185

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000185
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44393
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (27.63%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F002455	Metagenome / Metatranscriptome	557	Y
F009264	Metagenome / Metatranscriptome	320	N
F012669	Metagenome / Metatranscriptome	278	Y
F018368	Metagenome / Metatranscriptome	235	N
F038237	Metagenome	166	Y
F039506	Metagenome / Metatranscriptome	163	N
F085697	Metagenome / Metatranscriptome	111	N
F104500	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_10001853	F039506	N/A	MKYVKLIAKPDTWFKAGTEAFDYDEYGKRIALESYNKWLKSGSILARGIRVCEHDYELKLGYELGEERQDGELCNINEFDMTIVDDEKDIPWPKILGEILKKAGIGITIDEETRKRNFEDGIRHIQG
Ga0209190_100018532	F018368	N/A	MTITTLTTHGQKISNQIVSADVIEINQGPFSFTALTEAILTEEDKIVIRYEVDDEYCKHEITNDMLNNAHVEDGHIVFAWAHQLSISLYKLSVINAVE
Ga0209190_10001854	F002455	AGGA	MTDNRTYYYDIYGKMEPDYESMAAYLLDEGVLFTTSAIDRCTQKECLGLYILINDHFVPAADSESVTYDELPKLFEMYKEKKYDGVSQFVADKRGIPNIYWKDNSAFQKKLDLS
Ga0209190_100018540	F085697	N/A	MNTELKITVQEVLDLREALIHLERRIKQLIALEHKDWHRLYDLDIQSVEKGKQILKQIIQRD
Ga0209190_100018542	F104500	N/A	MNTKEITVADIIKFFQSIPPETKIRVKEEVQRNWETYTKYSNVIQHGDDEFNIEYIDGISYCKEKNVIDFGI
Ga0209190_10001855	F012669	N/A	MSEQTYINLKDAVKRPIFDVKNINRENPRFKQMVDSYQKWNQDDYFTEHRSTYENDIIECLERYDLDGFALAQYLSEYKYIEPDSELVHILEDVTFVKSSLETEMLNQWVKKNFLTIPDDVIGKKVNAKQGIRKYENHYITGIKPETYQVTVSDKIDKNGGYIVGFENVTFL
Ga0209190_100018554	F038237	N/A	MIDLNKVKAGHIATVLMDGEYKLNKGGRSGLPINIYNGRVTRDFRFTISLAGEETYNNIYPESIGKPNWFEFIKDGVVRNKKTGQLYLAGIPHNNKNNRFNLLVDNQPITEEQYKYIQQYRSDSDKPKFLTMSIDSVVNVEDPAIYVG
Ga0209190_10001857	F000962	N/A	MNIHVPEEIKKKYPQYEFRGKRREINNRIVIEAYNPVTEQTFYYSFEEDFFWIAGQIPDYKLQKV
Ga0209190_10001859	F009264	N/A	MRAYLEFSLMDDEVDHLTKIGFGAKIIDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCITYSSDKIVGVDLEFQNYPYKDDDCEMYPIISVKLDYNDFNKKMDYVCFQNLKYQAVVYFAPQTWNCDRNSKKIKF