Scaffold Ga0209190_1000182

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000182
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44466
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (21.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053244	Metagenome / Metatranscriptome	141	Y
F058087	Metagenome / Metatranscriptome	135	N
F071229	Metagenome / Metatranscriptome	122	Y
F093290	Metagenome / Metatranscriptome	106	N
F093858	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100018222	F093290	N/A	MATQIIPKKSSVLGKIPLTGDLAVGELVQNLADHCLYSKDASGNVFRIGTRPVPDKVEVFDIIGANLFYGKLAYADFPNSGSIYDSALWDVSRTTTDAAGNVTAEASATGAWSNKTNLQF
Ga0209190_100018227	F058087	AGG	MNARRIALLMVLLSFVFLGMAFLTSCVNVPIPPFGERVGELGNLQLALSAKYIPNTPPESPGETSHAFAWSKYGEAKLLKDK
Ga0209190_100018232	F093858	N/A	VDLRPDRRDLKQETLEMIDLNDPAAVCRSLGYFLDFLVMFVPPVALAFTAWRIAR
Ga0209190_100018235	F071229	GGAGG	MSDTTGIIGAGLILMSLYTTFQLGIECERERIRRERRRRFDEDQDNHDSANHDDFD
Ga0209190_10001824	F053244	N/A	MRLGITLARNGDTWQVKHLPSVPLAEQLTDFKAKQVAGEFSADETIIVSLNETLKRHASKHSAVVEVEMEDSPKKKK