Scaffold Ga0209190_1000118

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000118
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53694
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (90.41%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F000952	Metagenome / Metatranscriptome	822	Y
F002597	Metagenome / Metatranscriptome	544	Y
F025009	Metagenome	203	Y
F039983	Metagenome	162	Y
F047492	Metagenome	149	Y
F051880	Metagenome / Metatranscriptome	143	Y
F059902	Metagenome	133	Y
F083753	Metagenome	112	Y
F088417	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100011815	F000952	AGGAG	MATSDQEQKSINVPQHKRMAMGEKLDGQSMKGGSTTPTKQSGGLSQAKKK
Ga0209190_100011817	F059902	GGAG	MDKYDQAIEFLKGVDPGSYFDECAELMEELLAQAEARKPKPARFSTEEQAWLKQSSAGARYYAKARGIL
Ga0209190_100011822	F088417	GGAG	MAERIYIVRNDHGARLVKANLRQQALSHVASSEYTVRVASQDDLVEQIKAGTKIEQYRAPEQLELIDDSESPAN
Ga0209190_100011831	F083753	GGAG	MKHAEVQYISLGFKYERAQSPAAGQAAAQAIRTLLEAETIEDRTEARYLVERGRQEARQGVAA
Ga0209190_100011840	F025009	GAG	MNEEALKVKWFNGSKGCVGIAKVKTYEGQIEYRISPVDGFLEHMDVQQIVAWGGHFPVAAGEALFGSAT
Ga0209190_100011842	F047492	AGGAG	MNFDKNIFSQGQTLFTQNEFDKALSEAKAEIMAIAIQTTKQAMFLERRACAQMLLDMADMEDEGAVCTALRNAAEHMFNRIPAQNQ
Ga0209190_100011855	F039983	GGA	MKSLLNEELVKQVFFYSDEKRPDPLIADEVDIVQFAEKLEAVLRPLIAAEEHKRCVTIVAHMNREVASALSNQKP
Ga0209190_100011861	F002597	GAG	MALNPAQIYDPRYHTFESWACLMCELYGAQNLEIPNPLTDWKKWGNGLNAIDVFSNEATPRTDQYNNWYDWAEAMVAAVNPATQST
Ga0209190_100011867	F000273	GGA	MSEEKIQNMEAKGQLIEKITFALLPLLFSCVVYLMSALSNLAHEVTILNSKISLVVTSDNKQASNTGAELAREKLRQDLEKEIQRNRDQIAENRMHIAILEEKVPVNKAIKTLTGKD
Ga0209190_100011869	F051880	GGAG	MQKIALSTELVNAILQYLGNQPFIQVQQLINGIQQEAQAQAAPAAPADVTVVE