Scaffold Ga0209190_1000095

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000095
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57563
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (77.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F040071	Metagenome / Metatranscriptome	162	Y
F059758	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100009511	F001629	AGGAG	MILDQGKLANGLVDELLAVIHKYDESLYICSVIGVLELVKQQLITESLNMEDDE
Ga0209190_100009520	F040071	GAGG	MDTTLYPAWKEAVKRLLDGGMTYGSTVKRSYLIELCGVAPPTSIEDVRRYDLEVLKCITDIKDTLLTAHCMLLATDNAGSYVVIAPESQTQYAVDNGVKAITKEMKKMAMNVSFTKTALLSDPQRAKNADAQAKISMLAGMMGKENRELKRLAGTRNEINE
Ga0209190_100009560	F059758	AGGAG	MALKLTNVINPTTGQTCAEAYARITNFYGTKDQIQVQVAIHSSADARQSNLQTIKENAHYIGIADLQGDLIPAIYTSLKTLTEYAGAEDV