Scaffold Ga0209190_1000080

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000080
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62193
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (79.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014843	Metagenome / Metatranscriptome	259	Y
F035737	Metagenome / Metatranscriptome	171	Y
F075656	Metagenome / Metatranscriptome	118	N
F085115	Metagenome / Metatranscriptome	111	N
F089937	Metagenome / Metatranscriptome	108	N
F104430	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100008022	F085115	GGTGG	MADKKPEKPVTLGIKTPGKKAKVTHKVSKNKKGDVVVEHTNTNQGKWDKINLTKKGGSTTVKQGVKAVKSWHKNNPHRSQGR
Ga0209190_10000805	F089937	GGAGG	VATIASLADRLRSEIGDTPKSFVYTFTTDGTTNRFLVPYSPLDGANLIVNKNGIEISADVEVEEATGYLVFDDVPANGDDIIVAGNYFRYFTTNEVQSYINIAFLEHSAFHTDAYGRSVSLQNIPTLEEYPVVVYASTLALYALANDAAFDINVFAPDGVTIPRSERYQQLMQMIQTRKEQYKELCSQLGIGMFKIDVFSFRRISKTTNHYVPIFQPQEIDDRSAATRVHLPTPTYGNVETPVSVVTQDLFVYEGDAYEFTIVLDFEVDTYTAKSEILGVGIPGVIATFTITFPNVGTADGAGLRTLKLALTGTQTRMLPSTSYYDVQLTKDGVTHTYVRGKIFKTEEVTE
Ga0209190_100008063	F035737	N/A	MYRWLEILTMIENKKFIVNDTDWAHTLEKGVEDYTDMLFEAVWEGSDDVVPETLSGELFCGCSQCFWRETFFYLVPHLLEGYENGKIELED
Ga0209190_100008074	F075656	N/A	MILLLLHQFLNLIEVLEEMLSNEQFAELANKGGASRSFSTFETPKGPGVMVSIPGKEKITDAPLTSDQANRFRKDHEISATSDTYQGAWKSGNKIFQDVSKKHTNLPEARAAGEKNKQIAGYDLGGTDKRRMGGGDVYFGRKVPGVESNPEFVASAHATSEVERMSPKPKAQEFAEQAQISRGATYKGKKISVNEVYGTIAKNRRNRGV
Ga0209190_100008089	F014843	AGG	MNILVSLDGVLSSDTGEPIRAGVMLYYALNLNNRVALVTSRKTEDAEHWLQSHGIINYDDLIDYSFNLEGEDLKKRQFVMSRSRAPIEMYVDADPAMCAWVFEQQGIPAIVFMNPGYLAVEHRPDAPKKVRTWNQIEESINRVNVARSKDAANPKELEFWDD
Ga0209190_100008093	F104430	AGGAG	MNGKQFVDRYDDLNQGYIKHKQTQYKHYYQEELSFIPYTEELFWNKLIHLGWRKDYTTTECLVLVCPACEQAITKVVLKHNIDIRPLLKIEDKVKIHKTAYCKVIAKQSKAIPKEVEK