Scaffold Ga0209190_1000076

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000076
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63724
• Total Scaffold Genes: 128
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (67.97%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004641	Metagenome / Metatranscriptome	429	Y
F014135	Metagenome / Metatranscriptome	265	Y
F015470	Metagenome	254	N
F019602	Metagenome / Metatranscriptome	228	N
F020358	Metagenome	224	Y
F027747	Metagenome / Metatranscriptome	193	N
F043225	Metagenome / Metatranscriptome	156	Y
F058128	Metagenome	135	Y
F085161	Metagenome / Metatranscriptome	111	N
F101153	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_1000076120	F020358	GAG	MKRFKDYVKGTTLSKEEWEEEVYGPELVEVLKQVDGKWALVSKKTGKPLRYYKGEGKPSDEWVASQERQIQYFKHLG
Ga0209190_10000762	F058128	GGA	MDAVRWFPIVAPSYANVDGILADVHARKNEERWDEYNKQLIEKIHLRDYLYDLYSKRSHENHIRMEIYNVSTIDFYV
Ga0209190_100007622	F027747	GGA	MFGNVSTILVVLLLTFMVLNMITYKFYVGKDVYEFTAESKLNAMEMCNRQVIDKLDLHPMAWFDAGQNAFSCQSGNFFD
Ga0209190_10000764	F015470	N/A	MVTKKVIAKPTTKKATPVKKATVKRTVKKVSPAPTSVISVDVSGATKSASSMVDKAIDLIKWVDTPFKLFEVILLASIFFFGYFAWDSRVVILNAITQSSHVTNLKEVNHLVPVAGSLQKDLEATTVIVHKASLNVNTRKTMLAFGPKGRDNSLDGLNSSLFSKDQSRNAGIIGMLNGEVVCDKISVLDKSSEWESKQGVTFVCRGGIPPEIGDFDGYVAVGWKKEPSDLTIVKTRINLASSEMSQ
Ga0209190_10000765	F004641	AGGA	MAEENKESAKGAFIEKLLFALLPLLIGSTGYLIQALGSIQHDVTILNQKVSLVVTTDNKQASNSGAELAREKLRQDLEKEIQKNRDAIMENRQHIAVLEDRLGFGSKKIGSMKD
Ga0209190_100007673	F085161	GAG	MEVYIVKSFGPENGWVNLKAFDNNDAAVYFANTIEKQIPDDIEDEFVEIEVLNVRSWN
Ga0209190_100007682	F014135	GAGG	MSKGLTLDYDIADKITLLTMQDQLKYLQKELEDFKEGKWLHPEDVANNIKLISALELLIPYYGGTV
Ga0209190_100007684	F043225	AGGA	MNIDLINVELQDVALTQQQDEIDLTYQAFRDTMNAYHDMMTYESESYDEDCIFYGVN
Ga0209190_100007687	F019602	N/A	MDETTLIESYILEAWDKGLTGIDVVPYVQYMAGLPAFKIEPVLQALITRMSE
Ga0209190_100007699	F101153	N/A	MNFTKIIFFNQWRNGDCFINKEYVRDIISRFPNVEFLYAHNNHPNIVSDLNCKHVTLNEIPAIGTFVPLAVSQNEPNTLYINTWVGCWIGKHLAEKDHANFHCLHTMWKEIFNALELEMRGDYFFYLPKIDWYRFDLSECDSYLRTIVPKNLILICNGVQQSEQSSMGDMKNIIDSLSSSFPDYAFLITHDIGITKNNLICTDSIFGAPTGNLNQIGYISQFAKLIVGKNSGPFTYAHTKTNMNNPEQTFMCFSHKMRDCLMGEGEYLTNSYFSDTIDDQVAIRIISDLILKPTYISNRKPTKQIL