Scaffold Ga0209190_1000022

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000022
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 119674
• Total Scaffold Genes: 147
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (35.37%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F015867	Metagenome / Metatranscriptome	251	N
F018713	Metagenome	233	N
F028094	Metagenome / Metatranscriptome	192	N
F033033	Metagenome	178	N
F038674	Metagenome / Metatranscriptome	165	Y
F043930	Metagenome	155	N
F046324	Metagenome / Metatranscriptome	151	N
F047570	Metagenome / Metatranscriptome	149	N
F057138	Metagenome / Metatranscriptome	136	N
F058129	Metagenome	135	N
F065779	Metagenome / Metatranscriptome	127	Y
F070892	Metagenome	122	N
F093750	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_1000022100	F057138	AGG	MKRILTLLSLIASLFATKASAENLKASTEAGYTTHYIVNGVARTEAQAFGGVNIGATYLGVDAYLGATIIPASAVLDESHWLAGVGKGFKIMDGLTVRLDGQAFRHQTAIPGAPNSTEVAAIVALENVAVTPYVKATHDLDLDQTGYIIGLKRPTDVFGWFTITPLVEYGKFTDYDFKTAKVTVSKVLFNHLEPFAEIGYYDNNFGVTKYNFAIKELNNSVVALGGIRWNF
Ga0209190_1000022117	F033033	N/A	MKATLEFNLPEEEREYRIANQSADMYAVICHLAERLRSYRKHGNDFKNASEALDTIHTILYDELNARHIDIHD
Ga0209190_1000022119	F065779	GAG	MSSPSVTVSVNLKIKDQEITLSMEEASDLYSQLKGILGYNHQPYTVPYSWGSPSPYCTYTINCSDGTNSNWKTP
Ga0209190_1000022120	F038674	AGAAG	MSMNRKGFFKTLFGGFVAASAAPSLIKAEETPQPPKDLSLSREVLRIDEHGNLGIGGSSNIGLGTSTPRNKLHVEGIVFHVNDRMLEMAGDENGDFKIHWLDTKENEFASSVIIKKPKDDLWKTNSIAIY
Ga0209190_1000022127	F046324	N/A	MFCSKTKTKAKLEDCAVSWSGDTLSVCDKCRMSIWDFDYDDFHSQEKISEEE
Ga0209190_1000022128	F004723	AGAAG	MEKFDKFIHTDIVGRKYEVTYTGTRREVKGSGFEFFVDDKGDSCFFTDTEVKKMEKKD
Ga0209190_1000022129	F047570	AGAAG	MKMTDENKLKIVTLSHNIKALCYILDKKTFSEHCVTSGTFTEIESLFELTKELKEMNKEE
Ga0209190_1000022130	F018713	AGAAG	MSPDIDLIHKIPQEVKDAAILLGNYFKKQGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVSEGSDMETIICGLENSKKQFPNECGDGIDYTKSF
Ga0209190_1000022131	F015867	GAG	MKYKVTYYDYDSDNYLTKELYWMASYRGSFDFVPVSDGPKENWKGFSISGSGVNVFYNDKGLNITVDGFQEMKSGGYGKTTTLIQSAN
Ga0209190_1000022134	F043930	GAG	MNKLEKARWRNILRKAAKANRLFKKGYLVFDHHGIRFEGFKFENGLLYEGSENYRSIWISKDKPWSQHLQTPIKEFNAKRFDKWTAVHPKDIKKI
Ga0209190_1000022135	F058129	N/A	MKVYLVYNNSDRDGGVNAIFDTDRKALDFVIKEYYSAPYFKSMDSYSLDKLAREYVVEMKVL
Ga0209190_1000022144	F093750	N/A	MKFKVSYYDFDTDKYVTKECYRMSFYDGKFEFMPVDNPIKIYKSIIIDHPIPSVTQNNTGFVSISVVGYQWMKNGGYDKTTTKIENVRETAQY
Ga0209190_100002220	F070892	N/A	MKYYIIYFINGSYQYLHTSFDLMNNLDNLHLAGLNYDLIDYIVPLDKHIDQNTLEDRKYLPDGSSIWKKENLINKKVKDITIKRNALLKKLDIDFLISLESTNNRQTQVIKKNKNFLRELSCRTEMHHVHDCEKIHKFNAFYNIVDIEIIDPGYGCSEPVPCVTISPPEETDYNYGLVAAANAIRGSKGELLSVSMEKLGCGYISDPEIKISGYEGENAKHPILKAVVSNIM
Ga0209190_100002284	F028094	N/A	MQKEFDFRTPEEVAEHKKIAEENEKAFDLMFNSDEPVYNKYVDFLLDLVPFRLGWKARYWPNEIRWWAKCKYQKIRYGVSDDEVYSLGYNIALFILPRLKYFKKKGKTGISCCFLPDNFHLLEGKQQTAAEEKGIEEMNFALDEMIFAFEYIIDGDKFCELPESLSFKTKGLNLNSEKTIEEKQAWGEYMEKANKLNERKENGLMLFAKYYDILWI