Scaffold Ga0209190_1000018

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000018
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 126982
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (15.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015065	Metagenome / Metatranscriptome	257	Y
F037076	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100001831	F037076	N/A	MITLDVRISCDAFWNYKFNIPIRINDYYNSNDRNINRGGETDDAGTDTCRIGNIGRRDPGFCRLEEYLVDYVIQHIYDDLIRTRQERDLPILLKKARKFHIHGRTIQDILFPGNRNSDTHAMPENTLYICTHC
Ga0209190_100001875	F015065	N/A	MKLFTLEYNYTNPRFNILSLINVNLHKLLHEVNKDIIDTIEIHPHPTDSSEHNILYKFKEIGGDLGGFKTYMYVATKIAKRYASNGNTEIIFTSKSVPYEFHTELIQLKYKLLEYPLYIQKYIYREDAVGAASPVSNIQVLHMFKLKPDTESELTVAMENAIGILIKKLYLRLKIAIESLQA