Scaffold Ga0209190_1000015

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000015
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 136126
• Total Scaffold Genes: 191
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (14.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007108	Metagenome / Metatranscriptome	357	Y
F032580	Metagenome / Metatranscriptome	179	Y
F053241	Metagenome	141	N
F077278	Metagenome	117	Y
F091917	Metagenome / Metatranscriptome	107	Y
F093304	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_1000015117	F093304	N/A	MEAVNPRFNITVAGKKYGLQFDVNSNPTKKGVKMQFILDQEFEDPRDKQMLANEISVALQKKYGAAGIMIDYDDRNPFRNVIGFIVPLNSVAMMLIKAMKGGS
Ga0209190_1000015131	F077278	N/A	MLLQQQINDSFVQSHLMEYGILGFVAFILGYFAWIQYKRLVKKNDDLEVKIDRLQIEMMGLLVDERDRLAQLIRDNTAALQELQKTIFKYMVKKGE
Ga0209190_1000015136	F032580	N/A	MLYTKRDLQNLDTIEQAWDGDELKIEEQGYRVWLTHPENRQWNGDYTVETLVNGKWEQTNYSF
Ga0209190_1000015172	F007108	N/A	MQNSNRPSSYQKLTYIQKVSRINRKLRTGDITTVAETTGFSTTHVSDVISGKYFNDKIVNEAYDMTRGRLSNAVKLTSLEA
Ga0209190_100001565	F053241	N/A	MQKFIINEKLLDALDEYDKRSLLMQQHGSLKLPYQGDLYKDINDDLIYHVPIYDTAHRRFAAFCAFTEAIWYKEKDIRGMGNHFTNHDIKDDFNWFMLFYLFRLCGSGINYVPRYKTDHIKDILGTHGFGNFWIVNSILKEHYTWPEWKQDLYNRITPFTDNKGYLLPQFTFEGETRGHLRRFILDHAEGLVRHIYEAVTTKRLDIYQVTDLGNEYLNNIGFKRQNFVVTAFAADLAEYFPQYVNPKGWVYAGTNAVRCIKAIFPKVSPKIKEFEYINEVLQFLSNRYNLNPIDCEDSRACDVVRYFQEYQSEDHIIKNNGRRMYNNSILKQTWGHDKYYDFATKLK
Ga0209190_100001594	F091917	N/A	MIAKTKRVITSVKIPETLYDDFKITSIKSKMNLQDIVERSIFMYLTDSKFRQTIHEQYNTYYTGSSLIEAIK