Scaffold Ga0209190_1000011

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000011
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142632
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (45.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078162	Metagenome	116	N
F086536	Metagenome	110	N
F091246	Metagenome	107	N
F098564	Metagenome	103	N
F100277	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_1000011109	F091246	GAG	MSAVNNQVMTCPAIDPASTQTTDFLLQKWTSGGKNGVMNDSLPVDQTTGLITGTAIATQVQTLINNGTIPPPPVMSNGNSDMDKLMTQDGTMYTNLQSEFCWYESRYIYALNQFLQAATLRQATDAGPANQFLAITQTLNRRANSVLQIISYLAQTRVGDIMSSKTSIDKLNTDINTKIAKLQAGWAVLRTNDAAVTTQKEMVRYTEEKNNYTNNRLVVWTALNILALGAIFYVYQRA
Ga0209190_100001114	F078162	N/A	MGCGTIFQRTSQFQTEPMFGVPERRADGNSVYFYVPMASPTRLGVRLRMNSKLTVLPEASVQQKFDKLEQTVLVELTKTETLFKNKPSYDSLQRITPRWGIVYDKDDKPHWSEYTEKEFFFDVKEGAYTNSIVDLELIGILITRSTISPKFAVKFVEPDTKTDVIDFDWQTPAIPAKEIEEVNDLEAATDAKTLTLRSPALIAKEKADAKEQVKVLFRTADEARQTALSAMANFFGKYEVSDDESQFSDWVTDDDESTNSEA
Ga0209190_100001117	F098564	AGCAG	LLENPATKGFKYELWQGSTLFLITPVLGKATEVARTTDAILKWLGAAPGFNIYIWFRNDPREIKANQWPTKAQVNGGWTTVGTPNIVIYRSEEWERVLIHEMIHAMKWDWEVGPTPAPCWKMNKTDKLNPHLFEAWTELYAEWLACAWYGKLWDKQRKWQDLQATQLLARATHKWEENTSVFAYYVLKAALAPHFEFLWVFGQGKTPEEKQYVMCGLVTPELTRLRNLAKTTVPQDMSMRMSVPDKT
Ga0209190_100001143	F086536	AGG	MATGTANKDLVEAVRHYVHFDNLAEALNKQVTNARTMRSQYETKILTNLETTGMKNAVLQINGATLQRASRSQANPLSWGFLEEQLHAYYASHPARSGDETTAILDFLQNRRGSKTTEYLKKTVIGGAAADAGSKKPPT
Ga0209190_100001152	F100277	AGAAGG	MPSLKKSSSIPKKLGVKGDDTILKDAIDFLFQIKGIQYIQKHPDFVTPTAEEFFSHVANLTTEGSPKKRTCLSNRFTSFLCFLTPMFHDVHMCSSILSSLTITVYALTLYTTTSSYLREAPPTAPLNKALQAIDTTATVNSIRPSLYHFITVYMPYVPKQAIEKLVAVTEEFMRRTLTKLPTHVKSHLPALDIQEIGKDICHGLDTVYNYSPFFLQWKAPVAVLLTRCGMEPCRSMCEEIADFVKSKVHHDGQIA