Scaffold Ga0209190_1000008

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000008
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160406
• Total Scaffold Genes: 240
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 159 (66.25%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014734	Metagenome / Metatranscriptome	260	Y
F023005	Metagenome / Metatranscriptome	212	Y
F049494	Metagenome / Metatranscriptome	146	N
F053896	Metagenome / Metatranscriptome	140	N
F061573	Metagenome	131	N
F062751	Metagenome	130	N
F066590	Metagenome / Metatranscriptome	126	Y
F071159	Metagenome / Metatranscriptome	122	Y
F088547	Metagenome / Metatranscriptome	109	Y
F104750	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_1000008124	F066590	GGA	METLWEKVTQFFYKKKKMPLEGKDFKFIDFTNSEITGLQILEGEYAGVVYHYGKVRVVPQGEMGVLQFGYTIVNPGKHDIDDLTKDENFSTMMGDILTEILTKQQYETLRKDDNQEFDIQ
Ga0209190_1000008150	F053896	N/A	MKFKEFLTELAMPEVSSMARDVAVEEEINRQLEMGLKDVILSPQIGLYKVRKVLNRFGYDLPTSYVPDQDGDEVVLDIHGSDSLLYVLYYQTDDGNYDFYALIDDDEGIEEILSKDEELEKEE
Ga0209190_1000008159	F014734	AGGAG	MADQNEKGAFIEKLLFALLPLLIGCTGYLISALGALQHDVTILNAKVSLVVTSDNKQASNTGAELAREKLRQDLTEAVQRNRDSIQQNKEHIAILEEKVKRLERSK
Ga0209190_1000008194	F062751	GGAG	MQSNMDSALQAYAEYLKECYMSRGASWAKSGFDRQLVVEFDKGSKFIKVIIGYSTDGIRDTSRSSHSFIVLKSDKFQFGDILKSASWRAPAKNFARGNVLEKSYGSISWCGA
Ga0209190_1000008199	F049494	N/A	METFLISLQVAFVFIMWKWAEEAFEKELNHMGWLYIVASAGNAASVAVALGL
Ga0209190_1000008200	F104750	N/A	MRPLWRLHLDYKENMNTKLQKILADAKIGKAEFDAGSYYVCSEGTLETIIKSVVDACADEARRYTFRSNGISEDYNGTTNVEIEIRKLYESSN
Ga0209190_1000008218	F061573	GGA	MSGIYVMVTKDGYRVSASDQFVYLFGSYNDDNMNYNLETEVLQKIFGNCAVLETAKDAIESAKCISKTLNETEDGIMFIDSYGKYTFEELLDGRANKKGSNS
Ga0209190_1000008234	F088547	GGTGG	MVNFEQFKKSGVCAIYHRVPIEYLAEFRKVMAHQGKFFKIRYRGPRFNVPSARFRGWNSKQSTCLKEDAIAFSVYNY
Ga0209190_100000849	F023005	N/A	LAYEYGNEASVLVFIDGVKQKTDSYAVINGQIIFTTAPPNSGTNNIEVVYLGGSVVTTPYLSADEFGIIRINAAELTQNATITTGYNASSAGPLKVANNITVSVANNSTWTIF
Ga0209190_100000854	F071159	GGAG	MIYKLLTITEDGFKILARIDDDGLCRLTCTAQNPEFQTHIKAGAELQDADGNVMTQAEADAFIGTLP