Scaffold Ga0209190_1000002

Overview

Basic Information

• Taxon OID: 3300027736
• Scaffold ID: Ga0209190_1000002
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 263709
• Total Scaffold Genes: 287
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 186 (64.81%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024781	Metagenome / Metatranscriptome	204	Y
F028513	Metagenome / Metatranscriptome	191	Y
F044494	Metagenome / Metatranscriptome	154	Y
F058149	Metagenome / Metatranscriptome	135	N
F070115	Metagenome	123	N
F073562	Metagenome	120	N
F077308	Metagenome	117	N
F093879	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_1000002101	F044494	AGG	MKFNSVALSVLYFKVSVKKKPYSNEEICLLIAASDHTKRNAKDKVMLGKTLYFRELPLSTEQSVIDSHIENITKLNNFSVAQVL
Ga0209190_1000002117	F070115	GAGG	MSKFTHKTERYFGSKVNIHTISWKNQDDVDPKEIKKWCKKNYGNSGYDDETGSNRWVDNIKQCEIMLTRDEDLTLFLLRWE
Ga0209190_1000002165	F073562	N/A	LATKIEREFAFQAGVYFEGEFLMTIYELALKMEVDTASIKEQNIAMDRIHYFLHECLGNSIFVQDSEKKAIEKYMQADIKVCTLPDEPYDQIITILLLLKLNAITEGKLHITDISLMSGLSDDVKFVYDIENVSNHPFGNKGWWSDSSTNMSDITKSNKKDKIVRLVKQHSDWWSVGLDWEQKEYTTTEIIFSNDHEKQPL
Ga0209190_1000002238	F024781	N/A	MIEIFIPVLFMCLNDNCNFMQSQNVYKSEAQCRLSIDNQKKHMLEVANQAGQPKITILEGTCINTKIENTGKKI
Ga0209190_1000002242	F077308	N/A	MIHIKRFIDRVASIESRQGKDVVIPLSDARGLRDELAKLLVDHYEVTEGKKNTSEVIQVELVGGKF
Ga0209190_1000002249	F028513	GGAG	MLNQLAGYFCSLLNNFSRPQTYGTALEEYIVRHAPQNACDVDRLTRQFEIQQSGRGW
Ga0209190_1000002251	F058149	AGGA	MFTPDFYIEMFQTSKRMATNQIFKDERLNKVANDFIDAQTVFAKMMAKNTIEMLTYAADSMSKTIYPQGEDETVKAKTAKK
Ga0209190_1000002268	F093879	N/A	MTHPLVGKSYTFEDGNRMEIIQVREVDELRGGSSVTYLAYQGPGIPQKLILNLEQFIDIYGQLFE