NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1155995

Scaffold Ga0209087_1155995


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1155995 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)913
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020910Metagenome / Metatranscriptome221Y
F040623Metagenome / Metatranscriptome161Y
F070104Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_11559951F070104N/ARLMLGYTETDIAVMTDAIEDAIKSGRLSDEITDGLEKAQSFLDGLWAEGYFD
Ga0209087_11559952F040623AGAAGGMKVKIAIEQIIDIDDAMSNDIGFELYGPPDMSTDDKVDYLINRFCEDIDTLVKYDEVRDQIQVEYIED
Ga0209087_11559953F020910GAGGMWSKYTFVCDPDECDALVEFTVRDDFGFPLGVVQMKCPCGRFLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN

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