Scaffold Ga0209087_1080125

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1080125
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1420
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057168	Metagenome / Metatranscriptome	136	N
F071170	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10801253	F071170	AGG	MEQLKELLTSSTWAAKRAQYAIQFTEEYNSGRLSSDEYAELLNDLKNTDKLNLQAEELEIKVKLESAINTLLKFI
Ga0209087_10801254	F057168	N/A	MKKIILYLFLAVSLQGCLALAGISALMPSAWDVNQSAAITDIQQKSKRINCKTETTVLKKHLDSLDERVEWLIIYSESKKTTDIYNMANVYNSTLQDMITRTDKKSISNSYCENKKTLLIEQSYIISNALQGRN