NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1078789

Scaffold Ga0209087_1078789


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1078789 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1435
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F060703Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10787891F060703AGGAGVPYYSDNLDDLLAFDGIRSFSGGQASGLQSDLLAENQVQQLVNMTLSPKGSLETRKGVTSFSTTATSQLGSIGGMRYYDTSQSERLIAVTQGRLYTIDSNGNAQLRPADEIWNNFTGATRIWDNENQQWADGFATNYDVKVSMAQFNDKMYMADADGPLYFFDGASTGGTGITTRQGGKVRAITVTTAGTGYT
Ga0209087_10787892F000635AGGMTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTSRTITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCLTRTNIIVDFPPAQAALDDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA
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