Scaffold Ga0209087_1064255

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1064255
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1635
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y
F081267	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_10642552	F081267	GGAG	MSYQHHWVVVYDEDWGAFMVDAETTATMSRWSGTIYNKDSGHWEFPEEESDLANEYDSLENILAYNLTRLDLTSGIG
Ga0209087_10642555	F030094	GAGG	MKLRGIFEGTFESVWSMEVPQYEWDNYLEQHPDFDENDRDNIQEMWDYFKSIGCYDEIDDTVDKDVTMVGIETYGVEVEIN
Ga0209087_10642556	F016662	GGAG	MTYLVAVTEVVYDEEYLIKEMLATGEYGINAHPISHEAMVEFVKDREWQIEHNLFLTKYDIPVSIAIKDEDGTDVFFAKNKIEVK
Ga0209087_10642557	F043404	GAGG	MIDTTDPLLNELAFHFVDLHNVGGIELEQWETAYNFVKHFYHTEEMVQIIIREKR