NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1044124

Scaffold Ga0209087_1044124


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1044124 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2066
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001106Metagenome / Metatranscriptome776Y
F056615Metagenome / Metatranscriptome137Y
F058150Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10441242F056615N/AMYDLVDSVLPMFMDVYRQFDSQDTDTGAIKKEWQFDRTVPCSAKGIISNSSSSRTGDRQIMSNKYSNDQILQIRTIEKVTLREKITNIRDFEGIVIWEELNFPTNTPTVYELMGTTPMTDPFGAVIGYNSTVKRSENQEIGQ
Ga0209087_10441243F058150N/AMEILVGSNSPITHKVFWQGQLTDSDSMPVVKIYDITEDPAVSPPINPGTILATLVPVKSEVDSGTYIVYIPLTYTNRQRQLRLNWSYSVGGISAQKDHKIYVQTPYTDMSQAIDALGLGSDYSDPNSKSYFELCNAERYARKLIEAYTQQQFFLYDDVQIAYGSGSDVLPLQYKLAELHELYQNDILLLNNLTSVNNWNYNTIISESGFGIRVNRANMLDNTVYIANGMVPPPINDTYNGVFSNGVTYRVQGRFGWEEVPDEVDLACIELMKDYFSKDKIWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQLLLPYVINKMVVI
Ga0209087_10441244F001106N/ALRKVAEDFAVDTDGIKSKADIVAALAEEGVTWSVYQKTIKDIEDATDEFSENAEEILPRFNPDAQPENTVLVRMTRENFRYDIVGFTFTKEHPFVAMTEEDAQEIFDKEEGFRLATPKEVQEYYA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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