NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1042478

Scaffold Ga0209087_1042478


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1042478 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2115
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F038230Metagenome166N
F041020Metagenome / Metatranscriptome160Y
F061663Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10424782F003786N/AMSNLTKYQPRNSDEQAIITARSNRIANLDQKDAYKQTLNVISSVFPMYGIDGDFAFYANIAKEIVKIFGQIAANEIEIAFRLFSAESLELDSDIKFYGKANMHTIGKILNAYIVYRRRIIASHDNEIAALRHQKDMEERGQKEREKLYAEFPTMIKDFAGKTFNDVPLYWYDLCVQFNMITYEEGEKRQLWDEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK
Ga0209087_10424783F038230N/AMSKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMSREQRQKYIEYQRSYHKLKQFTNE
Ga0209087_10424784F041020N/AMKQTPKEKAKELFDYHHKLITNVGGELAQEILASILAEQCALFFASEMQAEKYSQKKYKAVEYWEEVELEIVNYANFKL
Ga0209087_10424786F061663N/AYERLAGVTYPSDKGNFIMTAKDGANCKKLVTWLKKVSASEQASDEMVTMFTTAAWQISDKWLKANFTISNIYSQANNIYTKFMYNNPAAQEKRRQEEIERLVNEYQP
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Institute for Fundamental Biomedical Research
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