NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209087_1031081

Scaffold Ga0209087_1031081


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1031081 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2553
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008078Metagenome / Metatranscriptome339Y
F031407Metagenome / Metatranscriptome182N
F034112Metagenome / Metatranscriptome175N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10310812F008078N/AMTPEEKAKELFNHYHNLIQSIGGELGQEILVSILAKQCALFLARETLQDKWNLENYEQYHYWVEVEYQIENTY
Ga0209087_10310813F031407N/AMTDKEKALLIIDLIEKITQEIIDKPMQRKRLLQMRSHLEKAVKLTGNGIKREWSRPPSLPLVSHAKAEPVSFKPSTTETNGDLLADNIPVVTKKARRK
Ga0209087_10310814F034112AGGAGMVIFNIGNKQIKYNYPETASDITLEQYIYFAKFLLPQHPKVELEAIQYLNDRDAVYQKILPYAKKLKITTKDVNQITMINQINNILNTQEVKDNVRRFLPALIIQWQTNDEQLGIRLKIMDEVWEANVRYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVYIYTKIMNAINTPTETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVRNGDPEGLLNIMAVLLKPLGEDYSDELFEKNKIDFLQMSLQTSYEVAFFLTKLSEKYMVGLQTSMLQKAMANLN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.