Scaffold Ga0209087_1022417

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1022417
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3089
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F014840	Metagenome	259	Y
F061801	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_102241712	F061801	AGGAG	MKTKSIFKSHASPSYKGYDREIYLSEYTPINKEHYRRLKFCAVVSVGINIFLLLVTILR
Ga0209087_10224172	F014840	N/A	MIPFSYAIVDDEGEVIRQHRWSVKEAKWFTDNNPHAKVIRLEKVKEVKEDLFKLVGECLF
Ga0209087_10224173	F006587	AGGAG	MDKNYEGTGFVLVGLIVGCCITWGVMKYSQTQTKYKTNLKCIQGELYEEVRTNMFVKSHLECFEQKTLVP
Ga0209087_10224174	F012016	AGG	MQTTLKQPFAWAIEEFNSDGEIVWSSIMQTRPVELSWIRDLPTKKHNIVITPLYKDEANAEKITGIKSYRESTQRLADAFNGL