Scaffold Ga0209087_1020029

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1020029
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3293
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017469	Metagenome / Metatranscriptome	240	Y
F027758	Metagenome	193	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_102002914	F069714	GAGG	MKIDIKESYMPEYTKVITFECEGKEYLAEVYLGKHCSDYTLYEGNKRLEDKPAWLEKTEQEDPNFSFMFFIDNLAWEYEQRQMSV
Ga0209087_102002915	F017469	AGG	MKDLCQFCGWEITKPEWYNNYNKAYACDDCLMDKDIEHYKERENA
Ga0209087_10200296	F027758	GGCGG	MLIDLFLVSFWVFGFFFLAGGLAWLADRLASFHLEGMERVRKLQAREKEREGAR