Scaffold Ga0209087_1019043

Overview

Basic Information

• Taxon OID: 3300027734
• Scaffold ID: Ga0209087_1019043
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3393
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011292	Metagenome / Metatranscriptome	292	Y
F021243	Metagenome	219	Y
F046909	Metagenome / Metatranscriptome	150	Y
F057982	Metagenome	135	N
F093280	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209087_101904311	F057982	GGAG	MRYRITYSNGHYADWDSMQKELARAYKWGVFLYAIRLNIGAWRAGHKSFKYWLYVLRRKPKITQERT
Ga0209087_101904313	F093280	AGGAG	MSPKIEALIKATGCADVGELFDRSIRLGSYLHQFKQEHGRPMTPTEWKYLEAVVHATPQERT
Ga0209087_101904316	F011292	N/A	DTCKEVVGDARMRVIEAKARQDADNGVMDAPAMAKGTYWDGVYSYMEYVVYVTAYEKRLARIKRMKERA
Ga0209087_10190437	F046909	GGGGG	MPPPSKELCLMMAKINFPRDEKLSWTWLVAWAFHEMYVDGWYEGVKL
Ga0209087_10190438	F021243	GGAGG	MKDPEDEAFEQLSLKQGSWEHTSGWRKKQIAHMDVHSHPAEFVHLHRNDTIEEVAVELETKFTMPFGRDTVQSFVAYIRGMKR